New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3481685	28 (0.530)	4 (0.080)	4/238	NT	9.7%	coding (439/909 nt)	PP_5561	hypothetical protein
	?	NC_002947	= 3481746	48 (0.970)					coding (378/909 nt)	PP_5561	hypothetical protein

TTCGATGCCGCCTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3481533‑3481685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccgCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATCCTGGCCAGGTTTCGACAGTG  <  NC_002947/3481746‑3481601                                                                                                                                                                                                                                                                                                             TTCGATGCCGCCTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCA                                                                                                                                                        >  8:247908/1‑149                                     ACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGC                                                                                                                    >  6:335662/1‑149                                                   GGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGAC                                                                                                      >  3:24411/1‑149                                                                     CACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGG                                                                                    <  4:24411/149‑1                                                                            GAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCAC                                                                              <  5:335662/148‑1                                                                                                                                                  TGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATCCTGGCCAGGTTTCGA       >  2:108877/1‑149                                                                                                                                                  TGCACCCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATCCTGGCCAGGTTTCGA       >  6:41560/1‑149                                                                                                                                                       CCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATCCTGGCCAGGTTTCGACAGTG  >  6:250989/1‑149                                                                                                                                                       CCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATC                      <  7:178630/129‑1                                                                                                                                                       CCGCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATC                      >  8:178630/1‑129                                                                                                                                                                                                                                                                                                             TTCGATGCCGCCTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3481533‑3481685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccgCCTGTTCGAACGGATCAAGGCCTTGCGCCCGCTGCAGGGCCAGGACCTGGACCTGTTCCGCCGGGTGCACGCCAAGTTCCTGCATGATTTCAGCTTCGCGGATGTGGCCCGTGCCCTTCATGGATCCTGGCCAGGTTTCGACAGTG  <  NC_002947/3481746‑3481601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.