New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3481685	28 (0.530)	4 (0.080)	4/238	NT	9.7%	coding (439/909 nt)	PP_5561	hypothetical protein
	?	NC_002947	= 3481746	48 (0.970)					coding (378/909 nt)	PP_5561	hypothetical protein

GCCTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACAGCTCGCCAAGCGTGAACGGGTTGA  >  NC_002947/3481542‑3481831                                                                                                                                                |                                                                                                                                                   gccTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCcggcgg                                                                                                                                                >  6:11937/1‑148 (MQ=255)     gCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGATGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAAcag                                                                                                                                           >  7:242558/1‑149 (MQ=255)      cAAAGTCGGCCTGCAGCGAGGCTCGGCCGAGCTTGTTGTGGGCGAGGGCAGTTGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAAcag                                                                                                                                           <  8:232417/148‑1 (MQ=255)           tCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAAcaggtccag                                                                                                                                     <  5:11937/149‑1 (MQ=255)                cTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCt                                                                                                                                >  1:280102/1‑149 (MQ=255)                 tGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGTCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTg                                                                                                                               >  5:250989/1‑149 (MQ=255)                            aCGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGcctgttcgaacggatcaaggccttgcgcccgc                                                                                                                    >  6:335662‑M1/1‑117 (MQ=255)                            aCGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCg                                                                                                                    >  5:41560/1‑149 (MQ=255)                                        gAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGcc                                                                                                         <  7:247908/148‑1 (MQ=255)                                          ggTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggac                                                                                                      >  3:24411‑M1/1‑103 (MQ=255)                                                 gAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGtt                                                                                               <  8:242558/149‑1 (MQ=255)                                                   gggCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCCGGTCCTGGCCCTGCAGCGGGCGCAAGGCCt                                                                                                        <  8:235933/138‑1 (MQ=255)                                                   gggCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCCGGTCCTGGCCCTGCAGCGGGCGCAAGGCCt                                                                                                        >  7:235933/1‑138 (MQ=255)                                                   gggCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGAt                                                                                                    <  2:170436/142‑1 (MQ=255)                                                   gggCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGAt                                                                                                    >  1:170436/1‑142 (MQ=255)                                                         tGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAgg                                                                                       >  6:90542/1‑149 (MQ=255)                                                            cACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgg                                                                                    <  4:24411‑M1/149‑65 (MQ=255)                                                            cACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgg                                                                                    >  6:250989‑M2/1‑146 (MQ=255)                                                                 tCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgggtgca                                                                               >  6:41560‑M2/1‑141 (MQ=255)                                                                 tCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgggtgca                                                                               >  2:108877‑M2/1‑141 (MQ=255)                                                                   gAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcac                                                                              <  5:335662‑M1/148‑71 (MQ=255)                                                                   gAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGt                                                                             >  5:80816/1‑149 (MQ=255)                                                                        cTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGgcg                                                                        >  1:38297/1‑149 (MQ=255)                                                                         tGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGgc                                                                         >  7:251676/1‑147 (MQ=255)                                                                         tGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGgc                                                                         <  8:251676/147‑1 (MQ=255)                                                                            ccAGGATCCATGAAGGGCACGGGCCACATCNGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCtt                                                                    >  1:27771/1‑149 (MQ=255)                                                                             cAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTg                                                                   >  7:241706/1‑149 (MQ=255)                                                                                gATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgg                                                                                    >  8:178630‑M2/1‑126 (MQ=255)                                                                                gATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgg                                                                                    <  7:178630‑M2/129‑4 (MQ=255)                                                                                             cACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGAgcag                                                    >  8:152276/1‑148 (MQ=255)                                                                                                       aTCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGa                                         <  8:241706/149‑1 (MQ=255)                                                                                                          cgcgAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTg                                                       <  5:42614/132‑1 (MQ=255)                                                                                                          cgcgAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTg                                                       >  6:42614/1‑132 (MQ=255)                                                                                                                gCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGTCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTgcgcgc                                >  8:154506/1‑149 (MQ=255)                                                                                                                  tGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGa                                         >  1:171886/1‑138 (MQ=255)                                                                                                                  tGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGa                                         <  2:171886/138‑1 (MQ=255)                                                                                                                      aTCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACa                          <  5:90542/149‑1 (MQ=255)                                                                                                                           gCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACAGCTCg                     >  2:111772/1‑149 (MQ=255)                                                                                                                                        gTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatcctggccaggtttc         <  5:335662‑M2/148‑79 (MQ=255)                                                                                                                                         tGCACCCGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatcctggccaggtttcga       >  6:41560‑M1/1‑8 (MQ=255)                                                                                                                                         tGCACCCGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatcctggccaggtttcga       >  2:108877‑M1/1‑8 (MQ=255)                                                                                                                                             cccGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACAGCt                       >  4:323026/1‑129 (MQ=255)                                                                                                                                             cccGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACAGCt                       <  3:323026/129‑1 (MQ=255)                                                                                                                                              ccGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatcctggccaggtttcgacagtg  >  6:250989‑M1/1‑3 (MQ=255)                                                                                                                                              ccGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatc                      >  8:178630‑M1/1‑3 (MQ=255)                                                                                                                                              ccGcctgttcgaacggatcaaggccttgcgcccgctgcagggccaggacctggacctgttccgccgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatc                      <  7:178630‑M1/129‑127 (MQ=255)                                                                                                                                              ccGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGcgggtgcacgccaagttcctgcatgatttcagcttcgcggatgtggcccgtgcccttcatggatcctggccaggtttcgacagtg  <  4:24411‑M2/149‑86 (MQ=255)                                                                                                                                              ccGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGc                                             <  7:58191/106‑1 (MQ=255)                                                                                                                                              ccGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGc                                             >  8:58191/1‑106 (MQ=255)                                                                                                                                                |                                                                                                                                                   GCCTGCAAAGTCGCCCTGCAGCGAGGCACGGCCGAGCTTGAGGTGGGCGAGGGCAGTGGCACTGTCGAAACCTGGCCAGGATCCATGAAGGGCACGGGCCACATCCGCGAAGCTGAAATCATGCAGGAACTTGGCGTGCACCCGGCGGAACAGGTCCAGGTCCTGGCCCTGCAGCGGGCGCAAGGCCTTGATCCGTTCGAACAGGCGGGTGCAGTCGGCGCCTTGCACGGCCTGGTGCAGCATCGGCTTGATCTGCGCGCTGAACAGCTCGCCAAGCGTGAACGGGTTGA  >  NC_002947/3481542‑3481831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.