| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3853796 | 38 (0.720) | 6 (0.120) | 4/244 | NT | 13.4% | intergenic (+79/+3) | PP_3401/PP_3402 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3853818 | 41 (0.810) | coding (377/396 nt) | PP_3402 | hypothetical protein | |||||
TCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3853648‑3853796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGTGCCCCGGTCAGCCCAGGCTGGCCGGGTATAAGCAGCCACGAGCGTGGCCACGGCCGCCGCTGATCGGCTTATTGCAGTTCCAGCAGCAGGTTCAGGCCACCGTCGCCGCACT < NC_002947/3853818‑3853674 TCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGC > 3:105101/1‑149TCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGC > 5:235559/1‑149 AGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGC < 5:294408/149‑1 CGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGT < 4:105101/149‑1 ATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCG > 1:4294/1‑115 ATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCG > 1:74944/1‑115 ATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCG < 2:4294/115‑1 ATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCG < 2:74944/115‑1 GCGCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGTGCCCCGGTCAGCCCAGGCTGGCCGGGTATAAGCAGCCACGAGCGTGGCCACGGCCGCCGCTGATCGGCTTATTGCAGTTCCAGCAGCAGGTTCAGGCCACCGTCGCCGCACT > 6:304696/1‑149 GCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGTGCCCCGGTCAGCCCAGGCTGGCCGGGTATAAGCAGGCACGAGCGTGGCCACGGCCGCCGCTGATCGGCTTATTGCAGTTCCAGCAGCAGGTTCAGGCCACCGTCGCCGCA < 5:191884/145‑1 GCCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGTGCCCCGGTCAGCCCAGGCTGGCCGGGTATAAGCAGACACGAGCGTGGCCACGGCCGCCGCTGATCGGCTTATTGCAGTTCCAGCAGCAGGTTCAGGCCACCGTCGCCGCA > 6:191884/1‑145 TCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3853648‑3853796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcCACTCAAGGCGATTGCCTGAGCGCGCCTGTCGTGCCCCGGTCAGCCCAGGCTGGCCGGGTATAAGCAGCCACGAGCGTGGCCACGGCCGCCGCTGATCGGCTTATTGCAGTTCCAGCAGCAGGTTCAGGCCACCGTCGCCGCACT < NC_002947/3853818‑3853674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |