New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3853796	38 (0.720)	6 (0.120)	4/244	NT	13.4%	intergenic (+79/+3)	PP_3401/PP_3402	hypothetical protein/hypothetical protein
	?	NC_002947	= 3853818	41 (0.810)					coding (377/396 nt)	PP_3402	hypothetical protein

AGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATGGTCAAGTGCG  >  NC_002947/3853674‑3853965                                                                                                                                                 |                                                                                                                                                    aGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgc                                                                                                                                                 >  6:304696‑M2/1‑145 (MQ=255)   tGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGTCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgc                                                                                                                                                   >  6:191884‑M2/1‑143 (MQ=255)   tGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGCCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgc                                                                                                                                                   <  5:191884‑M2/145‑3 (MQ=255)       gagACGGTTGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCGACGCTCGTGGCTGCTTATACACGGCCAGCCTGGGCTGACCGGGGCACGACAGTCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTg                                                                                                                                           <  3:15865/147‑1 (MQ=255)             gTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTCCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTAt                                                                                                                                      >  1:281777/1‑148 (MQ=255)              tGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCa                                                                                                                                    <  6:165779/149‑1 (MQ=255)               ggCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCac                                                                                                                                   <  6:235559/149‑1 (MQ=255)                             gctgGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCAGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAgc                                                                                                                     >  3:128255/1‑149 (MQ=255)                                        aaTAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAg                                                                                                          >  8:24625/1‑149 (MQ=255)                                         aTAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg                                                                                                         <  1:97329/149‑1 (MQ=255)                                            aGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGtt                                                                                                       <  2:131919/148‑1 (MQ=255)                                             gCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGa                                                                                                     >  6:265956/1‑149 (MQ=255)                                                 aTCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCacg                                                                                                                                  >  3:292876/1‑116 (MQ=255)                                                             cGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACt                                                                                     >  6:22234/1‑149 (MQ=255)                                                              gTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTg                                                                                    >  1:277519/1‑149 (MQ=255)                                                                      gCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTc                                                                            <  7:24625/149‑1 (MQ=255)                                                                                gctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGcgcg                                                                  <  4:128255/149‑1 (MQ=255)                                                                                  ttATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTg                                                                         <  7:259617/140‑1 (MQ=255)                                                                                  ttATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTg                                                                         >  8:259617/1‑140 (MQ=255)                                                                                  ttATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGAc                                                                >  7:128342/1‑149 (MQ=255)                                                                                       cccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCg                                                            <  2:281777/148‑1 (MQ=255)                                                                                       cccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGt                                                           >  6:219728/1‑149 (MQ=255)                                                                                        ccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt                                                          >  4:207505/1‑149 (MQ=255)                                                                                        ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTCGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt                                                          >  8:153072/1‑149 (MQ=255)                                                                                         cGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTg                                                         <  5:22234/149‑1 (MQ=255)                                                                                           gCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg                                                       <  5:265956/149‑1 (MQ=255)                                                                                           gCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg                                                       >  6:285169/1‑149 (MQ=255)                                                                                           gCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAg                                                       >  7:245325/1‑149 (MQ=255)                                                                                                    ggCTGACGGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACg                                                <  5:17765/147‑1 (MQ=255)                                                                                                      cTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCtt                                            <  8:128342/149‑1 (MQ=255)                                                                                                         aCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGt                                         <  2:277519/149‑1 (MQ=255)                                                                                                          ccGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTc                                        <  5:219728/149‑1 (MQ=255)                                                                                                             gggCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTgg                                          >  1:1733/1‑144 (MQ=255)                                                                                                             gggCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTgg                                          <  2:1733/144‑1 (MQ=255)                                                                                                                 aCGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttattgcagttccagcagcaggttcaggccaccgtcg                                 <  4:105101‑M2/149‑117 (MQ=255)                                                                                                                  cGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttat                                                                  >  1:4294‑M2/1‑32 (MQ=255)                                                                                                                  cGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttat                                                                  >  1:74944‑M2/1‑32 (MQ=255)                                                                                                                  cGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttat                                                                  <  2:4294‑M2/115‑84 (MQ=255)                                                                                                                  cGACAGGCGCGCTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttat                                                                  <  2:74944‑M2/115‑84 (MQ=255)                                                                                                                   gACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATcctg                               <  5:285169/149‑1 (MQ=255)                                                                                                                   gACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATcctg                               >  7:138230/1‑149 (MQ=255)                                                                                                                      aGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATcctggcc                            <  3:313977/149‑1 (MQ=255)                                                                                                                        gcgcgcTCAGGCAATCGCCTTGAGTGgcgcctgtcgtgccccggtcagcccaggctggccgggtataagcagccacgagcgtggccacggccgccgctgatcggcttattgcagttccagcagcaggttcaggccaccgtcgccgcact                          <  5:294408‑M2/149‑124 (MQ=255)                                                                                                                        gcgcgcTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTgg                                          <  2:2248/133‑1 (MQ=255)                                                                                                                        gcgcgcTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTgg                                          >  1:2248/1‑133 (MQ=255)                                                                                                                                  gCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATcctggccct                          <  3:134131/139‑1 (MQ=255)                                                                                                                                  gCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATcctggccct                          >  4:134131/1‑139 (MQ=255)                                                                                                                                    aaTCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGa              <  7:153072/149‑1 (MQ=255)                                                                                                                                      tCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATg            <  6:55745/149‑1 (MQ=255)                                                                                                                                      tCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATg            >  5:55745/1‑149 (MQ=255)                                                                                                                                          cTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCAACCAAGTTGACCAGGTCACGACAACAATTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATGGTc         >  7:52908/1‑148 (MQ=255)                                                                                                                                                tGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATGGTCAAGTgcg  >  3:285647/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    AGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGTGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTCACGCCTTGGTCGAGATCCTGGCCCTGGCCCAGGCGGATGGTCAAGTGCG  >  NC_002947/3853674‑3853965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.