New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3860084 =	54 (1.020)	6 (0.120)	5/242	NT	10.4%	coding (99/243 nt)	PP_3411	hypothetical protein
	?	NC_002947	3860169 =	52 (1.030)					coding (184/243 nt)	PP_3411	hypothetical protein

AGTTGTTCAGGCGCAGGCAGCGTGCGGTTTGTGTATCCGCAGCGTGGAGGCAGGGTTGTTGGCCAATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3860234‑3860084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcaTTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGCACTGGGGAT  >  NC_002947/3860169‑3860316                                                                                                                                                                                                                                                                                                             AGTTGTTCAGGCGCAGGCAGCGTGCGGTTTGTGTATCCGCAGCGTGGAGGCAGGGTTGTTGGCCAATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGG                                                                                                                                                        <  1:22440/149‑1                                                                CAATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGA                                                                                          >  4:14708/1‑148                                                                 AATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAA                                                                                         >  5:15120/1‑148                                                                 AATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAA                                                                                         >  5:83677/1‑148                                                                                         CGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCG                                                                <  3:14708/149‑1                                                                                                   ACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGG                                                      <  6:83677/149‑1                                                                                                                                   AAGCGGGTTTCGGCACAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTT                      <  6:15120/149‑1                                                                                                                                                   AGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGCACTGG      <  4:82290/149‑1                                                                                                                                                   AGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGCACTG       <  6:54443/148‑1                                                                                                                                                    GGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGTACTGGG     <  2:48744/149‑1                                                                                                                                                    GGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTC                                          >  5:266943/1‑112                                                                                                                                                    GGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTC                                          <  6:266943/112‑1                                                                                                                                                       ATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGCACTGGGGAT  >  2:332441/1‑149                                                                                                                                                                                                                                                                                                             AGTTGTTCAGGCGCAGGCAGCGTGCGGTTTGTGTATCCGCAGCGTGGAGGCAGGGTTGTTGGCCAATGCCTGACCGACCCGCGTCGGACGGGCTACCAACTGCCCGGTACAATTCGGGCAGCGGCCTTGGAAGCGGGTTTCGGCACAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3860234‑3860084 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcaTTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAACAACTGCAAAGCACCGGCATCACCGCTGTTTCAGGGTGATGTCTTTCCTGTTTCTTGTAGGACTTTTCAACAATAAGCACTGGGGAT  >  NC_002947/3860169‑3860316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.