New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3860084 =54 (1.020)6 (0.120) 5/242 NT 10.4% coding (99/243 nt) PP_3411 hypothetical protein
?NC_002947 3860169 = 52 (1.030)coding (184/243 nt) PP_3411 hypothetical protein

CTCGGGCGTAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAA  >  NC_002947/3859936‑3860229
                                                                                                                                                     |                                                                                                                                                 
cTCGGGCGTAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGt                                                                                                                                                   >  5:107411/1‑149 (MQ=255)
 atccccagtgcttattgttgaaaagtcctacaagaaacaggaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaat                                                                                                                                                   >  2:332441‑M1/149‑149 (MQ=255)
   gggCGTAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGcc                                                                                                                                                <  8:102512/149‑1 (MQ=255)
   gggCGTAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGc                                                                                                                                                 <  1:51400/148‑1 (MQ=255)
    cccagtacttattgttgaaaagtcctacaagaaacaggaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGcc                                                                                                                                                <  2:48744‑M1/4‑1 (MQ=255)
     ccagtgcttattgttgaaaagtcctacaagaaacaggaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCt                                                                                                                                               <  4:82290‑M1/5‑1 (MQ=255)
      cagtgcttattgttgaaaagtcctacaagaaacaggaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCt                                                                                                                                               <  6:54443‑M1/5‑1 (MQ=255)
        tAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGc                                                                                                                                           <  1:14456/149‑1 (MQ=255)
               cTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAAcc                                                                                                                                    <  6:107411/149‑1 (MQ=255)
                tCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATACTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAAccc                                                                                                                                   >  8:312596/1‑149 (MQ=255)
                   gggTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCt                                                                                                                                <  2:22734/149‑1 (MQ=255)
                     aaaagtcctacaagaaacaggaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCtt                                                                                                                               <  6:15120‑M1/21‑1 (MQ=255)
                         ccGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAg                                                                                                                          <  8:116204/149‑1 (MQ=255)
                         ccGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAg                                                                                                                          >  6:254211/1‑149 (MQ=255)
                          cGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTGACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAg                                                                                                                          >  1:52947/1‑149 (MQ=255)
                             cTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATGTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCg                                                                                                                      >  6:354263/1‑149 (MQ=255)
                                         gaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGcc                                                                                                                                                >  5:266943‑M1/109‑112 (MQ=255)
                                         gaaagacatcaccctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGcc                                                                                                                                                <  6:266943‑M1/4‑1 (MQ=255)
                                         gTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTg                                                                                                          >  5:327646/1‑149 (MQ=255)
                                         gTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTg                                                                                                          >  3:10650/1‑149 (MQ=255)
                                            aTGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTAc                                                                                                       <  2:52947/149‑1 (MQ=255)
                                               cccATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCg                                                                                                     <  6:67617/148‑1 (MQ=255)
                                                     cctgaaacagcggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGt                                                                                               <  6:83677‑M1/53‑1 (MQ=255)
                                                       ggAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTgg                                                                                            >  3:13619/1‑149 (MQ=255)
                                                          aCTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAg                                                                                         <  5:254211/149‑1 (MQ=255)
                                                          aCTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAg                                                                                         <  6:327646/149‑1 (MQ=255)
                                                           cTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGc                                                                                        <  5:320539/149‑1 (MQ=255)
                                                               cggtgatgccggtgctttgcagttgttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCg                                                                                     <  3:14708‑M1/63‑1 (MQ=255)
                                                                gCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAAc                                                                                                                                     <  3:77113/100‑1 (MQ=255)
                                                                gCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAAc                                                                                                                                     >  4:77113/1‑100 (MQ=255)
                                                                 ccccAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTc                                                                                   <  7:312596/149‑1 (MQ=255)
                                                                           gAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCg                                                                                                                                         <  3:96630/85‑1 (MQ=255)
                                                                           gAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCg                                                                                                                                         >  4:96630/1‑85 (MQ=255)
                                                                              tGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGt                                                                                               >  5:56202/1‑124 (MQ=255)
                                                                              tGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGt                                                                                               <  6:56202/124‑1 (MQ=255)
                                                                              tGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGc                                                                                        >  5:10911/1‑131 (MQ=255)
                                                                              tGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGc                                                                                        <  6:10911/131‑1 (MQ=255)
                                                                                cTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGggtcggtc                                                                    <  4:13619/149‑1 (MQ=255)
                                                                                cTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGggtcggt                                                                     <  4:10650/148‑1 (MQ=255)
                                                                                 tgtgATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGggtcggt                                                                     >  1:182483/1‑147 (MQ=255)
                                                                                   tgATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAgg                                                                 >  3:273197/1‑149 (MQ=255)
                                                                                        ttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCAtt                                                             >  5:83677‑M1/62‑148 (MQ=255)
                                                                                        ttcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCAtt                                                             >  5:15120‑M1/62‑148 (MQ=255)
                                                                                        ccGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTg                                                            <  2:182483/149‑1 (MQ=255)
                                                                                         tcaggcgcaggcagcgtgcggtttgtgtatccgcagcgtggaggcagggttgttggccaaTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTg                                                            >  4:14708‑M1/61‑148 (MQ=255)
                                                                                         cGACCTGCCGGGTGACCGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTgg                                                           <  7:289061/149‑1 (MQ=255)
                                                                                         cGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTgg                                                           >  5:239451/1‑149 (MQ=255)
                                                                                         cGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTgg                                                           <  7:224211/149‑1 (MQ=255)
                                                                                             cTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCcaa                                                       >  7:42369/1‑149 (MQ=255)
                                                                                                ccGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTc                                                                                   >  8:99017/1‑118 (MQ=255)
                                                                                                ccGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTc                                                                                   <  7:99017/118‑1 (MQ=255)
                                                                                                  gggTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAAcc                                                  <  8:42369/149‑1 (MQ=255)
                                                                                                      gACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGc                                              >  2:63067/1‑149 (MQ=255)
                                                                                                        cAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTgg                                                                                            >  6:329275/1‑101 (MQ=255)
                                                                                                        cAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTgg                                                                                            <  5:329275/101‑1 (MQ=255)
                                                                                                         aGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTc                                           >  2:318584/1‑149 (MQ=255)
                                                                                                             ccGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTgg                                                                                            >  4:228691/1‑96 (MQ=255)
                                                                                                             ccGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTgg                                                                                            <  3:228691/96‑1 (MQ=255)
                                                                                                              cGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGc                                      >  5:23696/1‑149 (MQ=255)
                                                                                                                 cGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGc                                   <  1:63067/149‑1 (MQ=255)
                                                                                                                              tCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAAcc                      >  6:185458/1‑149 (MQ=255)
                                                                                                                               ccTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCg                     >  7:116833/1‑149 (MQ=255)
                                                                                                                                cTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCg                     >  1:81774/1‑148 (MQ=255)
                                                                                                                                     aaTGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGc                                              <  6:21236/118‑1 (MQ=255)
                                                                                                                                     aaTGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGc                                              >  5:21236/1‑118 (MQ=255)
                                                                                                                                       tGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGctgc             <  6:239451/149‑1 (MQ=255)
                                                                                                                                         cACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGctgcct           <  5:185458/149‑1 (MQ=255)
                                                                                                                                         cACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGctgcc            <  6:23696/148‑1 (MQ=255)
                                                                                                                                          aCGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGctgcctg          >  6:10251/1‑149 (MQ=255)
                                                                                                                                                  ccGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGaa  <  2:81774/149‑1 (MQ=255)
                                                                                                                                                  ccGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGaa  <  8:116833/149‑1 (MQ=255)
                                                                                                                                                  ccGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGaa  <  5:10251/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
CTCGGGCGTAGCAGACTCCGGGTTCCCGCCTGCGAACAGGAGTCATGCCCATGCTGGAACTACGCCCCAACTGCGAGTGCTGTGATGCCGACCTGCCGGGTGACAGCCCCGACGTCATGATCTGCTCCTTCGAATGCACGTTCTGCCGTGCCTGTGCCGAAACCCGCTTCCAAGGCCGCTGCCCGAATTGTACCGGGCAGTTGGTAGCCCGTCCGACGCGGGTCGGTCAGGCATTGGCCAACAACCCTGCCTCCACGCTGCGGATACACAAACCGCACGCTGCCTGCGCCTGAA  >  NC_002947/3859936‑3860229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.