New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4033194 =	64 (1.210)	3 (0.060)	3/242	NT	5.1%	coding (832/1008 nt)	PP_3555	transmembrane sensor
	?	NC_002947	4033241 =	50 (0.990)					coding (879/1008 nt)	PP_3555	transmembrane sensor

TAGATGCCGCTGATGCGAATGCGGCCGGTGCTGGCATCGGCCAGTAGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4033246‑4033194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTT  >  NC_002947/4033241‑4033385                                                                                                                                                                                                        TAGATGCCGCTGATGCGAATGCGGCCGGTGCTGGCATCGGCCAGTAGCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCT                                                   >  7:86437/1‑149     TGCCGCTGATGCGAATGCGGCCGGTGCTGGCATCGGCCAGTAGCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAA                                                                                                  <  3:185911/98‑1     TGCCGCTGATGCGAATGCGGCCGGTGCTGGCATCGGCCAGTAGCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAA                                                                                                  >  4:185911/1‑98                                                  GCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTT  <  2:28518/149‑1                                                                                                                                                                                                        TAGATGCCGCTGATGCGAATGCGGCCGGTGCTGGCATCGGCCAGTAGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4033246‑4033194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTT  >  NC_002947/4033241‑4033385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.