New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4033194 =	64 (1.210)	3 (0.060)	3/242	NT	5.1%	coding (832/1008 nt)	PP_3555	transmembrane sensor
	?	NC_002947	4033241 =	50 (0.990)					coding (879/1008 nt)	PP_3555	transmembrane sensor

CGACTATGGCAACAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTTACAA  >  NC_002947/4033094‑4033389                                                                                                                                                    |                                                                                                                                                     cgacTATGGCAACAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCa                                                                                                                                                     >  6:86239/1‑149 (MQ=255)     agcacggtgctgccgtccttgctgcgggtcaggtagaccggcaggactttgggcaggttgttgaccaggcgccccacttcccgggtgttgtagatgCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTa                                                                                                                                                 >  7:86437‑M1/97‑149 (MQ=255)       tGGCAACAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTac                                                                                                                                                <  1:240914/148‑1 (MQ=255)       tGGCAACAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTac                                                                                                                                                <  5:8907/148‑1 (MQ=255)           aaCAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAacac                                                                                                                                           >  6:227539/1‑149 (MQ=255)                      aaggCGCAGCCGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCCCTGCTACTCGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGCGAAgagc                                                                                                                                >  8:154185/3‑146 (MQ=255)                      aTGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTgg                                                                                                                                <  7:73351/149‑1 (MQ=255)                      aTGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTgg                                                                                                                                <  5:86239/149‑1 (MQ=255)                       tGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTggg                                                                                                                               <  7:174661/149‑1 (MQ=255)                         gcgcAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGgc                                                                                                                             >  5:278401/1‑149 (MQ=255)                             aGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCt                                                                                                                         <  6:278401/149‑1 (MQ=255)                                 gCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTc                                                                                                                     <  5:227539/149‑1 (MQ=255)                                 gCAAGCTGGTGCTAGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTc                                                                                                                     <  6:245133/149‑1 (MQ=255)                                    aGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTcaac                                                                                                                  <  4:320426/149‑1 (MQ=255)                                     gCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGTCATCTACAACACCCGGGAAGTGGGGCGCCt                                                                                                                         >  5:76354/1‑141 (MQ=255)                                     gCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCt                                                                                                                         <  6:76354/141‑1 (MQ=255)                                     gCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTcaaca                                                                                                                 <  7:113554/149‑1 (MQ=255)                                          tGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTg                                                                                                            >  8:12786/1‑149 (MQ=255)                                             tCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGcc                                                                                                          >  7:188257/1‑148 (MQ=255)                                               gACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTggg                                                                                                                               <  5:235466/125‑1 (MQ=255)                                               gACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTggg                                                                                                                               >  6:235466/1‑125 (MQ=255)                                                    tttgggcaggttgttgaccaggcgccccacttcccgggtgttgtagatgCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCa                                                                                                                                                     >  4:185911‑M1/50‑98 (MQ=255)                                                    tttgggcaggttgttgaccaggcgccccacttcccgggtgttgtagatgCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCa                                                                                                                                                     <  3:185911‑M1/49‑1 (MQ=255)                                                    ccTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTcc                                                                                                  >  1:28518/1‑149 (MQ=255)                                                     cTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCt                                                                                                 >  8:149/1‑149 (MQ=255)                                                     cTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCt                                                                                                 >  8:271424/1‑149 (MQ=255)                                                        aGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGc                                                                                               <  7:149/148‑1 (MQ=255)                                                        aGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGc                                                                                               <  7:271424/148‑1 (MQ=255)                                                           cTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGt                                                                                           <  7:12786/149‑1 (MQ=255)                                                             ggAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTc                                                                                          >  5:311683/1‑148 (MQ=255)                                                               aaCAGGCGCTGCGGGTGATCAACCGCTACCTCGAGGCCCCGCTGCTACTGGCCGATGCAAGCACCGGCCGCATTCGCATGAGCGGCATCTACAACACCCGGGAAGTGGGGGGCCTGGTCTACAACCTGCCCATAGTCCTGCCGGTCTAc                                                                                       <  7:154185/149‑1 (MQ=255)                                                                   ggCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGa                                                                                   >  5:5857/1‑149 (MQ=255)                                                                   ggCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGa                                                                                   <  6:5857/149‑1 (MQ=255)                                                                       cTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCg                                                                               >  8:231401/1‑149 (MQ=255)                                                                          ccGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCgcag                                                                            <  3:319574/149‑1 (MQ=255)                                                                          ccGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCgcag                                                                            >  5:325200/1‑149 (MQ=255)                                                                            ggTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGaa                                                                                                                                    >  8:35513/1‑91 (MQ=255)                                                                            ggTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGaa                                                                                                                                    <  7:35513/91‑1 (MQ=255)                                                                            ggTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGt                                                                                                                      <  6:6759/105‑1 (MQ=255)                                                                            ggTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGt                                                                                                                      >  5:6759/1‑105 (MQ=255)                                                                                  cAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCACGGACg                                                                    >  6:340760/1‑149 (MQ=255)                                                                                     ccGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGgca                                                                 <  7:231401/149‑1 (MQ=255)                                                                                           ccTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCAcc                                                            <  6:325200/148‑1 (MQ=255)                                                                                               tagatgccgctgatgcgaatgcggccggtgctggcatcggccagtagcagcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCt                                                       >  7:86437‑M2/54‑149 (MQ=255)                                                                                                   tgccgctgatgcgaatgcggccggtgctggcatcggccagtagcagcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCaaa                                                                                                      <  3:185911‑M2/49‑1 (MQ=255)                                                                                                   tgccgctgatgcgaatgcggccggtgctggcatcggccagtagcagcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCaaa                                                                                                      >  4:185911‑M2/50‑98 (MQ=255)                                                                                                    cccGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATc                                                  <  8:188257/149‑1 (MQ=255)                                                                                                    cccGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATc                                                  >  6:290889/1‑149 (MQ=255)                                                                                                             aCTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTcg                                          >  8:57145/1‑148 (MQ=255)                                                                                                             aCTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTcg                                          <  7:57145/148‑1 (MQ=255)                                                                                                              cTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTcgcc                                        >  5:97315/1‑149 (MQ=255)                                                                                                               tGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTcgccg                                       >  1:257651/1‑149 (MQ=255)                                                                                                                   cGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTg                                                                                                                                 >  8:190001/1‑55 (MQ=255)                                                                                                                   cGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTg                                                                                                                                 <  7:190001/55‑1 (MQ=255)                                                                                                                              ccGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGc                        >  7:205200/1‑149 (MQ=255)                                                                                                                               cGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCt                       <  5:290889/149‑1 (MQ=255)                                                                                                                                  ccGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGAc                    <  6:311683/149‑1 (MQ=255)                                                                                                                                                gcggCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCtt      <  2:28518‑M2/145‑1 (MQ=255)                                                                                                                                                    cATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTTACaa  <  8:86437/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGACTATGGCAACAGCCTGGCATGGCGCAGCGGCAAGCTGGTGCTCGACAACCTGAGCCTGGAACAGGCGCTGCCGGTGATCAACCGCTACCTCGACGCCCCGCTGCTACTGGCCGATGCCAGCACCGGCCGCATTCGCATCAGCGGCATCTACAACACCCGGGAAGTGGGGCGCCTGGTCAACAACCTGCCCAAAGTCCTGCCGGTCTACCTGACCCGCAGCAAGGACGGCAGCACCGTGCTCAATCGCATCTCGCCGCCGCCCGGCAAGGGCTGACGCCCTCCCCGCCTTACAA  >  NC_002947/4033094‑4033389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.