| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4140591 = | 44 (0.830) | 4 (0.080) | 4/234 | NT | 8.1% | coding (219/597 nt) | PP_5609 | hypothetical protein |
| ? | NC_002947 | 4140641 = | 50 (1.030) | coding (269/597 nt) | PP_5609 | hypothetical protein | |||||
CGCGCTTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4140748‑4140591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGA > NC_002947/4140641‑4140721 CGCGCTTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTG < 7:278434/149‑1 TTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCC > 6:214832/1‑149 TCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGT > 3:291190/1‑132 TCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGT < 4:291190/132‑1 GTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTC < 1:255782/99‑1 GTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTC > 2:255782/1‑99 GCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGA < 1:150617/129‑1 GCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGA > 2:150617/1‑129 GCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGG > 3:22452/1‑112 GCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGG < 4:22452/112‑1 CGCGCTTGTTGGTGAAGCTCAGGTAGCTCTTGGCCTGTACCGCCTCGCGGTAGTGGTTGCCGAAGCGCAGGGTATGGATCACGGCCGAGGCGTGCTCGATTTCGCCATCGGCGCCGACGACGGCGGCCTTACCGTAGGCCTCGATCTTGTCGGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4140748‑4140591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggcgccgATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGA > NC_002947/4140641‑4140721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |