New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140591 =	44 (0.830)	4 (0.080)	4/234	NT	8.1%	coding (219/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	4140641 =	50 (1.030)					coding (269/597 nt)	PP_5609	hypothetical protein

ACAAGCCGGTGACCATGGTCGGCCTGGCCGTCGTGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTACCTGAGCTTCAC  >  NC_002947/4140443‑4140737                                                                                                                                                     |                                                                                                                                                   aCAAGCCGGTGACCATGGTCGGCCTGGCCGTCGTGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCGTTggc                                                                                                                                                    >  3:145974/1‑149 (MQ=255)       cGGTGACCATGGTCGGCCTGGCCGTCGTGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGcc                                                                                                                                              >  8:127690/1‑149 (MQ=255)                tGGTCGGCCTGGCCGTCGTGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCGTTGGCGGCGCCGACAAGATc                                                                                                                                     <  4:145974/149‑1 (MQ=255)                               tcgtGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAg                                                                                                                      <  3:326509/149‑1 (MQ=255)                                       aaGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAg                                                                                                                                  <  1:212626/129‑1 (MQ=255)                                       aaGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAg                                                                                                                                  >  2:212626/1‑129 (MQ=255)                                         gAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCcgtcg                                                                                                            >  6:168451/1‑149 (MQ=255)                                                             gTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATc                                                                                        >  1:332161/1‑149 (MQ=255)                                                             gTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATc                                                                                        >  3:217212/1‑149 (MQ=255)                                                                  gTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGc                                                                                    <  5:102585/148‑1 (MQ=255)                                                                   ttGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCat                                                                                  >  6:362685/1‑148 (MQ=255)                                                                   ttGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCAc                                                                                  <  1:186462/149‑1 (MQ=255)                                                                    tcttggcctgtaccgcctcgcggtagtggttgccgaagcgcagggtatggatcacggccgaggcgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGgcgc                                                                                                     >  2:150617‑M1/82‑129 (MQ=255)                                                                    tcttggcctgtaccgcctcgcggtagtggttgccgaagcgcagggtatggatcacggccgaggcgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGgcgc                                                                                                     <  1:150617‑M1/48‑1 (MQ=255)                                                                       aGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCt                                                                              >  4:205209/1‑149 (MQ=255)                                                                        gATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCATGACTGCTGCCATTGGCGGCGCCGACACGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGAGGCCGAAATCGAGCACGCCTc                                                                             >  5:341415/1‑149 (MQ=255)                                                                           cTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCa                                                                                   >  1:138880/1‑140 (MQ=255)                                                                             gAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCg                                                                        >  8:80897/1‑149 (MQ=255)                                                                              aaGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGt                                                                       >  1:109270/1‑149 (MQ=255)                                                                                  cGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATc                                                                   <  2:109270/149‑1 (MQ=255)                                                                                   cctcgcggtagtggttgccgaagcgcagggtatggatcacggccgaggcgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGgc                                                                                                       >  3:22452‑M1/67‑112 (MQ=255)                                                                                   cctcgcggtagtggttgccgaagcgcagggtatggatcacggccgaggcgtgctcgatttcgccatCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGgc                                                                                                       <  4:22452‑M1/46‑1 (MQ=255)                                                                                         tCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATAccc                                                            >  5:43372/1‑149 (MQ=255)                                                                                           gcgcCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTg                                                          >  7:283635/1‑149 (MQ=255)                                                                                           gcgcCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTg                                                          >  4:330834/1‑149 (MQ=255)                                                                                                     cTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGc                                                 >  6:107002/1‑148 (MQ=255)                                                                                                               ggTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCTCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTAc                                        <  7:80897/147‑1 (MQ=255)                                                                                                               ggTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCATGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTAc                                        <  5:362685/147‑1 (MQ=255)                                                                                                               ggTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCTGTGATCCATACCCTGCGCTTCGGCAACCACTACcg                                      >  3:123163/1‑149 (MQ=255)                                                                                                                   cccTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                  <  2:332161/149‑1 (MQ=255)                                                                                                                   cccTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                  >  5:11485/1‑149 (MQ=255)                                                                                                                   cccTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                  <  4:217212/149‑1 (MQ=255)                                                                                                                      tGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCg                               >  3:107317/1‑149 (MQ=255)                                                                                                                        aTGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCgg                              >  2:190120/1‑148 (MQ=255)                                                                                                                        aTGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCgg                              <  3:330834/148‑1 (MQ=255)                                                                                                                           ggcGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACa                          <  5:107002/147‑1 (MQ=255)                                                                                                                            tCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGt                             >  1:232189/1‑145 (MQ=255)                                                                                                                            tCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGt                             <  2:232189/145‑1 (MQ=255)                                                                                                                                 cgcCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCaa                    <  3:205209/149‑1 (MQ=255)                                                                                                                                  gcCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAag                   <  1:190120/149‑1 (MQ=255)                                                                                                                                   ccTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAaga                  <  8:283635/149‑1 (MQ=255)                                                                                                                                    cTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCaa                    >  8:126864/1‑146 (MQ=255)                                                                                                                                    cTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAaga                  <  7:126864/148‑1 (MQ=255)                                                                                                                                     tGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGc                >  1:28138/1‑149 (MQ=255)                                                                                                                                      gACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                  >  6:216443/1‑130 (MQ=255)                                                                                                                                      gACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAg                                  <  5:216443/130‑1 (MQ=255)                                                                                                                                       aCTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTa              >  5:214832/1‑149 (MQ=255)                                                                                                                                            ggcCAGTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCTTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTACCTGa         <  8:309119/148‑1 (MQ=255)                                                                                                                                              ccATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTACCTGAGc       <  4:107317/149‑1 (MQ=255)                                                                                                                                                aTTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAaga                  <  1:27573/136‑1 (MQ=255)                                                                                                                                                aTTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAaga                  >  2:27573/1‑136 (MQ=255)                                                                                                                                                    gcggcgCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCTGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTACCTGAGCTTCAc  <  4:123163/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACAAGCCGGTGACCATGGTCGGCCTGGCCGTCGTGATCAAGAACCCATGGGCCGGTCGCGGTTTCGTTGAAGATCTGAAGCCGGAAATTCGCGCCAACTGCTCGGAGCTGGGTGCCCTGATGGTCGAGCGCCTGACTGCTGCCATTGGCGGCGCCGACAAGATCGAGGCCTACGGTAAGGCCGCCGTCGTCGGCGCCGATGGCGAAATCGAGCACGCCTCGGCCGTGATCCATACCCTGCGCTTCGGCAACCACTACCGCGAGGCGGTACAGGCCAAGAGCTACCTGAGCTTCAC  >  NC_002947/4140443‑4140737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.