| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4464579 | 56 (1.060) | 4 (0.080) | 3/242 | NT | 7.5% | coding (1376/1974 nt) | betT‑III | choline/carnitine/betaine transporter BetTC |
| ? | NC_002947 | = 4464617 | 45 (0.890) | coding (1338/1974 nt) | betT‑III | choline/carnitine/betaine transporter BetTC | |||||
GGCAAGGCTTGATTGCGCAACCCGCGGCGAGTCGCATCAAGACTCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4464426‑4464579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGGCG < NC_002947/4464617‑4464473 GGCAAGGCTTGATTGCGCAACCCGCGGCGAGTCGCATCAAGACTCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAG > 8:203852/1‑149GGCAAGGCTTGATTGCGCAACCCGCGGCGAGTCGCATCAAGACTCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAG < 3:110887/149‑1 CAAGGCTTGATTGCGCAACCCGCGGCGAGTCGCATCAAGACTCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGC > 5:190331/1‑148 TCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCG > 3:173632/1‑149 AACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCT < 5:127314/148‑1 ACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGG < 1:35486/149‑1 ACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGG < 4:173632/149‑1 CGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGC > 3:66841/1‑64 CGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGC < 4:66841/64‑1 GCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGG > 8:69084/1‑149 GCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAG < 1:305546/148‑1 GCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGC > 7:161170/1‑139 GCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGC < 8:161170/139‑1 CAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGGC > 2:263133/1‑149 AACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGGCG < 4:280776/149‑1 ACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGG < 4:39499/146‑1 ACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGG > 3:39499/1‑146 GGCAAGGCTTGATTGCGCAACCCGCGGCGAGTCGCATCAAGACTCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4464426‑4464579‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCGGTCATCCTGCTGGTTGCGATTTGGGGCTTGTTCAAGGCG < NC_002947/4464617‑4464473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |