New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4464579	56 (1.060)	4 (0.080)	3/242	NT	7.5%	coding (1376/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	= 4464617	45 (0.890)					coding (1338/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC

TCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTGGAGAACGGAAAATGCTCCAG  >  NC_002947/4464469‑4464763                                                                                                                                                     |                                                                                                                                                    tCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATc                                                                                                                                                     >  3:46818/1‑149 (MQ=255)     cgcCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgtt                                                                                                                                                 <  4:280776‑M2/149‑5 (MQ=255)      gcCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttg                                                                                                                                                >  2:263133‑M2/1‑144 (MQ=255)       ccTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgc                                                                                                                                               >  8:69084‑M2/1‑143 (MQ=255)       ccTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgt                                                                                                                                                  <  4:39499‑M2/146‑4 (MQ=255)       ccTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgt                                                                                                                                                  >  3:39499‑M2/1‑143 (MQ=255)        cTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgc                                                                                                                                               <  1:305546‑M2/148‑7 (MQ=255)              cAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAggg                                                                                                                                        >  5:106155/1‑149 (MQ=255)                 gCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgc                                                                                                                                               <  8:161170‑M2/139‑7 (MQ=255)                 gCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgc                                                                                                                                               >  7:161170‑M2/1‑133 (MQ=255)                 gCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTAGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACCGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgt                                                                                                                                      >  5:221789/1‑148 (MQ=255)                    ccAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtgagt                                                                                                                                  <  4:66913/149‑1 (MQ=255)                    ccAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtgagt                                                                                                                                  >  5:20412/1‑149 (MQ=255)                     cAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtga                                                                                                                                    <  6:307130/146‑1 (MQ=255)                     cAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtga                                                                                                                                    >  5:307130/1‑146 (MQ=255)                      aaaTCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtgagtga                                                                                                                                <  7:203852/149‑1 (MQ=255)                           gCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCtt                                                                                                                            <  6:20412/148‑1 (MQ=255)                               ccAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCg                                                                                                                       <  2:305546/149‑1 (MQ=255)                                 agcagGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtgagtg                                                                                                                                 <  3:304363/137‑1 (MQ=255)                                 agcagGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGgtgagtg                                                                                                                                 >  4:304363/1‑137 (MQ=255)                                    agGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACCGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCggagga                                                                                                                  <  6:221789/149‑1 (MQ=255)                                      gATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGaggagg                                                                                                                >  7:208840/1‑149 (MQ=255)                                          aCCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGa                                                                                                             <  4:46818/148‑1 (MQ=255)                                                   ggCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCAc                                                                                                   <  3:280776/149‑1 (MQ=255)                                                     cAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGc                                                                                                               <  5:335995/135‑1 (MQ=255)                                                     cAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCAGGAGGAGGc                                                                                                               >  6:335995/1‑135 (MQ=255)                                                       aaGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGAc                                                                                                >  1:176828/1‑148 (MQ=255)                                                            cTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGAcc                                                                                                                              >  6:258219/1‑113 (MQ=255)                                                            cTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGAcc                                                                                                                              <  5:258219/113‑1 (MQ=255)                                                             tCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCa                                                                                         >  8:5226/1‑149 (MQ=255)                                                                   tGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGa                                                                                                 <  2:168501/135‑1 (MQ=255)                                                                   tGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGa                                                                                                 >  1:168501/1‑135 (MQ=255)                                                                     gTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTc                                                                                <  5:200095/149‑1 (MQ=255)                                                                            tCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGTATATCCACGACCAGCGCACCAGA‑GTCCGCCGAg                                                                         <  8:208840/149‑1 (MQ=255)                                                                              tGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCAcc                                                                                       <  5:359392/134‑1 (MQ=255)                                                                              tGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCAcc                                                                                       >  6:359392/1‑134 (MQ=255)                                                                                cAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTca                                                                     <  2:176828/149‑1 (MQ=255)                                                                                         gAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAac                                                             <  1:327890/148‑1 (MQ=255)                                                                                         gAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAac                                                             <  8:108184/148‑1 (MQ=255)                                                                                          aGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAaca                                                            <  6:106155/148‑1 (MQ=255)                                                                                             ccGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAg                                                                         <  7:244277/132‑1 (MQ=255)                                                                                             ccGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGCTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAg                                                                         >  8:244277/1‑132 (MQ=255)                                                                                                    ccAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgctgctggcgaacggcctcaaggcgctgcagaccgcgaccattgcgagcgctttgccgttcgcggtcatcctgctggttgcgatttggggcttgt                                                  <  1:35486‑M2/149‑100 (MQ=255)                                                                                                    ccAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgctgctggcgaacggcctcaaggcgctgcagaccgcgaccattgcgagcgctttgccgttcgcggtcatcctgctggttgcgatttggggcttgt                                                  <  4:173632‑M2/149‑100 (MQ=255)                                                                                                      agcagcAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgctgctggcgaacggcctcaaggcgctgcagaccgcgaccattgcgagcgctttgccgttcgcggtcatcctgctggttgcgatttggggcttgtt                                                 <  5:127314‑M2/148‑101 (MQ=255)                                                                                                               gcgATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGAc                                      >  6:346139/1‑149 (MQ=255)                                                                                                               gcgATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGAc                                      <  5:346139/149‑1 (MQ=255)                                                                                                                cgATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCcgttgctgctggcgaacggcctcaaggcgctgcagaccgcgaccattgcgagcgctttgccgttcgcggtcatcctgctggttgcgatttggggcttgttcaaggcgctga                                      >  3:173632‑M2/1‑38 (MQ=255)                                                                                                                                tATGCAGACTGACCAGAAGACCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAgg                                                                        <  3:120289/98‑1 (MQ=255)                                                                                                                                tATGCAGACTGACCAGAAGACCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAgg                                                                        >  4:120289/1‑98 (MQ=255)                                                                                                                                         tGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGACGTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCa                                    <  1:77869/126‑1 (MQ=255)                                                                                                                                         tGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCa                                    >  2:77869/1‑125 (MQ=255)                                                                                                                                         tGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTg                      <  3:213251/139‑1 (MQ=255)                                                                                                                                         tGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTg                      >  4:213251/1‑139 (MQ=255)                                                                                                                                           aCCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTccgcc                                                                            <  6:225364/83‑1 (MQ=255)                                                                                                                                           aCCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTccgcc                                                                            >  5:225364/1‑83 (MQ=255)                                                                                                                                            ccAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTGGAGAACGGAAAAt         >  8:78308/1‑149 (MQ=255)                                                                                                                                             cAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTGGAGAACGGAAAATg        >  3:45102/1‑149 (MQ=255)                                                                                                                                                   aTCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTGGAGAACGGAAAATGCTCCAg  <  7:5226/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TCAGCGCCTTGAACAAGCCCCAAATCGCAACCAGCAGGATGACCGCGAACGGCAAAGCGCTCGCAATGGTCGCGGTCTGCAGCGCCTTGAGGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGA‑GTCCGCCGAGGTCACAAAGAACACGACCACCATCAGCACCGCGACCAGCGAAATGATGCTGGAGAACGGAAAATGCTCCAG  >  NC_002947/4464469‑4464763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.