New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4613812	51 (0.970)	4 (0.080)	4/234	NT	9.0%	coding (183/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	= 4613881	34 (0.700)					coding (252/4593 nt)	PP_4085	rhs family protein

GCGACGCAATTCTTCATCCATCGCTTGCCGCTGAAATGATCAGCGCAGTTGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4613661‑4613812 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgtcgccGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCCGCACCGCCAGTGGCTACGGTGCCAACCACGGCCAAGCTGATGGCTGCGGCGACGGCCGCGGTG  <  NC_002947/4613881‑4613737                                                                                                                                                                                                                                                                                                           GCGACGCAATTCTTCATCCATCGCTTGCCGCTGAAATGATCAGCGCAGTTGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTC                                                                                                                                                      <  6:144321/149‑1   GACGCAATTCTTCGTCCATCGCTTGCCGCTGAAATGATCAGCGCAGTTGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGC                                                                                                                                                    >  7:217557/1‑149   GACGCAATTCTTCATCCATCGCTTGCCGCTGAAATGATCAGCGCAGTTGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGC                                                                                                                                                    <  1:102145/149‑1                                                              TATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGC                                                                                          >  7:54616/1‑148                                                                                      CGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCC                                                                 <  8:54616/149‑1                                                                                                                       CACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAG                                                                   <  3:262114/114‑1                                                                                                                       CACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAG                                                                   >  4:262114/1‑114                                                                                                                                                GGCGTCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCCGCACCGCCAGTGGCTACGGTGCCAACCACGGCCAAGCTGATGGCTGCGGCGACGGCCG       >  1:276254/1‑149                                                                                                                                                    TCGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCCGCACCGCCAGTGGCTACGGTGCCAACCACGGCCAAGCTGATGGCTGCGGCGACGGCCGCGGT   <  6:41936/149‑1                                                                                                                                                     CGCCGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCCGCACCGCCAGTGGCTACGGTGCCAACCACGGCCAAGCTGATGGCTGCGGCGACGGCCGCGGTG  >  4:237804/1‑149                                                                                                                                                                                                                                                                                                           GCGACGCAATTCTTCATCCATCGCTTGCCGCTGAAATGATCAGCGCAGTTGCCGAGGCCGTTATCTATGCAGCGGCCACCGCGGCCGTCGCCGCAGCCATCAGCTTGGCCGTGGTTGGCACCGTAGCCACTGGCGGTGCGGCTGGCGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4613661‑4613812 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgtcgccGACAGTCTGGTCTTCGCCGACGGAAAGGGTGCTCACTGCTCCGACTGCCACACCCGCGACTGCGGCGATGGCGACGCCAGCCGCACCGCCAGTGGCTACGGTGCCAACCACGGCCAAGCTGATGGCTGCGGCGACGGCCGCGGTG  <  NC_002947/4613881‑4613737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.