| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4683186 | 38 (0.720) | 6 (0.140) | 6/210 | NT | 14.7% | intergenic (+45/‑176) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4683234 | 38 (0.870) | intergenic (+93/‑128) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein | |||||
CGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4683018‑4683186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGT < NC_002947/4683234‑4683095 CGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GC < 6:39748/149‑1 GATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGCTCCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GC < 1:87405/149‑1 TTCTCTGTACCTGGTGCCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCC > 6:96963/1‑148 GTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCG > 4:172159/1‑149 ACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGG > 7:125416/1‑149 CAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGC < 8:257668/144‑1 CAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGC > 7:257668/1‑144 GGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAA > 3:197850/1‑149 CCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCT > 8:158739/1‑149 CGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGG < 7:158739/149‑1 GCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGC < 4:197850/149‑1 gtgGGGCGTTGAGTCGTTACAGGGGCTGCTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTG < 4:288790/141‑1 CTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAtat > 3:288790/1‑146 GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGT < 8:305972/129‑1 GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGT > 7:305972/1‑129 GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCG > 7:265950/1‑125 GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCG < 8:265950/125‑1 GCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAG > 1:2922/1‑149 GCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAA < 4:75428/103‑1 GCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAA > 3:75428/1‑103 CACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGT < 2:2922/149‑1 GCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTACCCGCGAATGGG < 6:361344/75‑1 GCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTACCCGCGAATGGG > 5:361344/1‑75 CGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAG‑ACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCA‑GCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4683018‑4683186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGT < NC_002947/4683234‑4683095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |