| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889569 = | 39 (0.740) | 3 (0.070) | 3/200 | NT | 11.4% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889660 = | 16 (0.390) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4889738‑4889569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACC > NC_002947/4889660‑4889803 ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGC < 2:711/148‑1 GGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA < 7:112490/149‑1 CGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCCCGAAGCAGACAACAAGGTGGATGGCAACGGCATTGCCCGTGTTAGCGGGCGAGCCCG > 2:264968/1‑149 CCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACA < 1:264968/149‑1 GATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCAGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTAGCGGGCGAGCCCGCTCCCACAGG > 3:99021/1‑149 ATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC > 1:84194/1‑95 ATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC < 2:84194/95‑1 CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA > 4:9387/1‑75 CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA < 3:9387/75‑1 GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAG > 4:245645/1‑110 GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAG < 3:245645/110‑1 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCA > 1:185925/1‑149 GTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGT > 8:208826/1‑149 GAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTT > 5:239126/1‑148 GAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGC < 7:180767/133‑1 GAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGC > 8:180767/1‑133 CGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAG < 5:56207/102‑1 CGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAG > 6:56207/1‑102 TCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCC < 7:208826/147‑1 ACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCAC > 7:84058/1‑149 CAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACC < 8:84058/149‑1 AGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACC > 6:150378/1‑109 GGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAC < 3:83457/106‑1 GGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAC > 4:83457/1‑106 ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4889738‑4889569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACC > NC_002947/4889660‑4889803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |