| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889569 = | 39 (0.740) | 3 (0.070) | 3/200 | NT | 11.4% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889660 = | 16 (0.390) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
ATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAT > NC_002947/4889426‑4889687 | ggtgggtggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCtg < 8:84058‑M1/5‑1 (MQ=255)acctaCTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCtgt < 5:313947/145‑1 (MQ=255)acctaCTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCtgt < 5:308545/145‑1 (MQ=255) gtgggtggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCtgt > 7:84058‑M1/144‑149 (MQ=255) aaCTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCCGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTggg < 4:83810/149‑1 (MQ=255) cTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCtgt > 6:313947/1‑144 (MQ=255) cTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCtgt > 6:308545/1‑144 (MQ=255) ggaaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑a < 7:208826‑M1/10‑1 (MQ=255) ccGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCgg > 8:48384/1‑149 (MQ=255) cGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCggg < 4:311189/149‑1 (MQ=255) cTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCt > 2:270809/1‑149 (MQ=255) ccTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTc < 6:193651/147‑1 (MQ=255) aacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTc > 5:239126‑M1/131‑148 (MQ=255) gTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAAGAACTCGGGACCCTGTGGG‑AGCgg < 8:148591/140‑1 (MQ=255) gTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCgg > 7:148591/1‑140 (MQ=255) gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGaa > 8:199886/1‑149 (MQ=255) acctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTCGCCCGCGAacac > 8:208826‑M1/120‑149 (MQ=255) ccTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCg < 7:48384/149‑1 (MQ=255) cTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCgg > 5:353382/1‑149 (MQ=255) tGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACACAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCgg > 5:176293/1‑148 (MQ=255) gccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTc > 8:180767‑M1/116‑133 (MQ=255) gccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTc < 7:180767‑M1/18‑1 (MQ=255) cGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCACGCCCGCGAACACCCGCAAAGc > 4:99021/1‑149 (MQ=255) ccaatGGCTACCATGGCTGGGTGGGCGCGGATTACAACCCGCCGCCCAACAACGTAGCCGGCCTGGGCTGGCCGAAAACCCACAACGCAATCTTGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGc < 1:270809/145‑1 (MQ=37) ttGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGt < 6:353382/149‑1 (MQ=255) ggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCt > 6:150378‑M1/106‑109 (MQ=255) gttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggcccc > 4:83457‑M1/105‑106 (MQ=255) gttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggcccc < 3:83457‑M1/2‑1 (MQ=255) cTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCa < 7:199886/149‑1 (MQ=255) gggCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAcc > 7:58288/1‑149 (MQ=255) gCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGa < 3:156068/149‑1 (MQ=255) cttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCg < 5:56207‑M1/13‑1 (MQ=255) cttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCg > 6:56207‑M1/90‑102 (MQ=255) tgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg > 1:185925‑M1/79‑149 (MQ=255) cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTgg < 4:223054/83‑1 (MQ=255) cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTgg > 3:223054/1‑83 (MQ=255) cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGACTTGTCTGCTTCGCGGGc > 1:280865/1‑148 (MQ=255) aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCCCCGAGTTGTCTGCTTCGCGGGc > 3:342738/1‑147 (MQ=255) cGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGccc < 8:58288/149‑1 (MQ=255) accGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAaca < 2:225534/88‑1 (MQ=255) ccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAggg > 8:261005/1‑149 (MQ=255) gctggctgAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGc > 1:342063/1‑120 (MQ=255) gctggctgAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGc < 2:342063/120‑1 (MQ=255) ctggcttAAAACCCACAACCAATTC‑TGCGTAACACCTCGGGACCTTGGGGG‑TGCGGGCGCGCCCGCTAACACGGGAAATGCCGGTGCCATCCACCGTGTTGTCTGCTTCGCGGGCTAGCCCGCTCCCACAGGGGGCCAAAGcttgcttg < 4:342738/149‑1 (MQ=21) ctggctgAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGc > 4:319047/1‑136 (MQ=255) ctggctgAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGc < 3:319047/136‑1 (MQ=255) tcttgAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCTGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTga < 2:247537/145‑1 (MQ=255) gAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGGCAGCGGGCTCGCCTGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTga > 1:247537/1‑145 (MQ=255) ctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGc > 4:245645‑M1/38‑110 (MQ=255) ctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGc < 3:245645‑M1/73‑1 (MQ=255) aaaaCCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGACTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGatat > 6:274835/1‑148 (MQ=255) aaaCCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATca < 7:261005/149‑1 (MQ=255) accccACAACGAATTC‑TGAGGAACAACTCGGCCCCTTGTGGT‑TGGGGGCTCGCCGGCTAACACCGGCAACGCGGGTGCCATCCACCTATTTGTCTGTTTCGGGGGGTTGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATcac < 2:280865/147‑1 (MQ=255) ccACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCCAACACCGGCAAAGCCGGTGCCATCCCCCCAGTTGTCTGCTTCGCGGGCGCCCCCGCACCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAt > 8:302873/1‑149 (MQ=38) | ATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATC‑TGAGGAACAACTCGGGACCCTGTGGG‑AGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAT > NC_002947/4889426‑4889687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |