| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4950757 = | 57 (1.080) | 6 (0.120) | 4/248 | NT | 10.2% | coding (94/498 nt) | fliL | flagellar protein FliL |
| ? | NC_002947 | 4950789 = | 50 (0.970) | coding (62/498 nt) | fliL | flagellar protein FliL | |||||
TGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4950792‑4950757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATT > NC_002947/4950789‑4950936 TGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGA > 7:125461/1‑149TGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTT > 7:120665/1‑147 GCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGG‑TCAAAGG < 3:269158/130‑1 GCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGG‑TCAAAGG > 4:269158/1‑130 GTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTA < 8:120665/148‑1 GTCGGCCTGTTGCTGGCGATCGGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTA < 8:125461/148‑1 CAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATT < 4:158050/149‑1 TGCTGGCTGTCGTCGGCCTGTTGCTGGCGATCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4950792‑4950757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATT > NC_002947/4950789‑4950936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |