New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5110754	65 (1.230)	4 (0.080)	4/244	NT	5.7%	intergenic (‑49/+590)	aroP‑II/rluB	aromatic amino acid transport protein/23S rRNA pseudouridylate synthase B
	?	NC_002947	= 5110781	69 (1.360)					intergenic (‑76/+563)	aroP‑II/rluB	aromatic amino acid transport protein/23S rRNA pseudouridylate synthase B

AGGAACAGGCCGGTACCAATCGCACCGCCGAGGGCGATCAACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5110602‑5110754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTCCGATTCCGTCACAGATAAAAACAATGCAGGTGACTTCGTTCATGAGTGGACAAAACATGCATTCAGGCGAGCTAAAGCGGGGCCTGAAGAACCGCCATATCCAGTTGATCGCC  <  NC_002947/5110781‑5110634                                                                                                                                                                                                                                                                                                               AGGAACAGGCCGGTACCAATCGCACCGCCGAGGGCGATCAACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACC                                                                                                                                                          >  6:364659/1‑149     ACAGGCCGGTACCAATCGCACCGCCGAGGGCGATCAACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACC                                                                                                                                                      >  7:63636/1‑149                  AATCGCACCGCCGAGGGCGATCAACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACCTTGCCCATTCCG                                                                                                                                          >  5:240091/1‑148                                        AACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACCTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTC                                                                                                                   <  6:240091/149‑1                                                  GGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACCTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGG                                                                                                                     >  7:290712/1‑137                                                  GGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACCTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGG                                                                                                                     <  8:290712/137‑1                                                                                                                                                      CACCTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTCCGATTCCGTCACAGATAAAAACAATGCAGGTGACTTCGTTCATGAGTGGACAAAACATGCATTCAGGCGAGCTAAAGCGGGGCCTGAAGAACCGCCATATCCAGTTGATC     <  8:309730/149‑1                                                                                                                                                        CCTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTCCGATTCCGTCACAGATAAAAACAATGCAGGTGACTTCGTTCATGAGTGGACAAAACATGCATTCAGGCGAGCTAAAGCGGGGCCTGAAGAACCGCCATATCCAGTTGATCGC   >  3:241965/1‑149                                                                                                                                                         CTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTCCGATTCCGTCACAGATAAAAACAATGCAGGTGACTTCGTTCATGAGTGGACAAAACATGCATTCAGGCGAGCTAAAGCGGGGCCTGAAGAACCGCCATATCCAGTTGATCGCC  >  4:275206/1‑149                                                                                                                                                                                                                                                                                                               AGGAACAGGCCGGTACCAATCGCACCGCCGAGGGCGATCAACTGGATATGGCGGTTCTTCAGGCCCCGCTTTAGCTCGCCTGAATGCATGTTTTGTCCACTCATGAACGAAGTCACCTGCATTGTTTTTATCTGTGACGGAATCGGACCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5110602‑5110754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccTTGCCCATTCCGCTGCGCCACGAGCGCGGTGGGTCCGATTCCGTCACAGATAAAAACAATGCAGGTGACTTCGTTCATGAGTGGACAAAACATGCATTCAGGCGAGCTAAAGCGGGGCCTGAAGAACCGCCATATCCAGTTGATCGCC  <  NC_002947/5110781‑5110634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.