New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5196392	46 (0.870)	4 (0.080)	5/234	NT	7.7%	coding (123/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196417	53 (1.090)					coding (98/690 nt)	ybgJ	allophanate hydrolase subunit 1

TACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5196234‑5196392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctcgccgCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACACAG  <  NC_002947/5196417‑5196271                                                                                                                                                                                                                                                                                                                     TACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGT‑CAGCAAA                                                                                                                                                               <  4:306164/149‑1       ACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCTAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTC                                                                                                                                                          >  1:246062/1‑149       ACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTC                                                                                                                                                          >  3:95763/1‑149       ACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTC                                                                                                                                                          >  5:232579/1‑149         CGGGATGTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTTCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCATTGTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGC                                                                                                                                                        <  4:102435/149‑1              TCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGC                                                                                                                                                     >  3:168183/1‑147                        GCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGC                                                                                                                                                        <  3:160867/134‑1                        GCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGC                                                                                                                                                        >  4:160867/1‑134                                     CCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAAT                                                                                                                                                              >  8:175628/1‑115                                     CCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAAT                                                                                                                                                              <  7:175628/115‑1                                             AGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAG                                                                                                                     <  8:204396/147‑1                                             AGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAG                                                                                                                     >  7:204396/1‑147                                                                    GAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGA                                                                                                                      >  7:137642/1‑123                                                                    GAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGA                                                                                                                      <  8:137642/123‑1                                                                                                                                                    AAATGCTCGCCGAACGCC‑GCGCTCAAGCGCCGGCTGGCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAG            >  4:168183/1‑149                                                                                                                                                           CGCCGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACA     >  7:190448/1‑149                                                                                                                                                              CGCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGCCGCCAGGCGAGCCCAGGGAGCGAATCGCTCAGGCGCTGGACCGCTTGCAGCCTGACcccg  >  6:259079/1‑145                                                                                                                                                               GCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCT                                 <  6:93408/117‑1                                                                                                                                                               GCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCT                                 >  5:93408/1‑117                                                                                                                                                                                                                                                                                                                     TACCACACCGGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5196234‑5196392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctcgccgCCAGCCGGCGCTTGAGCG‑CGGCGTTCGGCGAGCATTTGCTGGACCTGGTGCCGTCTTATACTACGCTGATGGTGCAGTCTGCCCTGGCGCCAGGCGAGGCCAGGGCGCGAATCGCTCAGGCGCTGGACGGCTTGCAGCCTGACACAG  <  NC_002947/5196417‑5196271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.