New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5244966 =	42 (0.800)	4 (0.080)	4/246	NT	8.7%	coding (373/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	5245022 =	43 (0.840)					coding (429/834 nt)	hmgR	Hmg transcriptional repressor

CAAAGCGGCCAGTTCCCTGTCGCGCAGCTCCTGGGTTTCTCGCTCGGGCAGGTAGGCGGCGAATACCAGCCCGGTGGACGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245115‑5244966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGG  >  NC_002947/5245022‑5245168                                                                                                                                                                                                                                                                                                           CAAAGCGGCCAGTTCCCTGTCGCGCAGCTCCTGGGTTTCTCGCTCGGGCAGGTAGGCGGCGAATACCAGCCCGGTGGACGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGC                                                                                                                                                      <  5:364112/149‑1  AAAGCGGCCAGTTCCCTGTCGCGCAGCTCCTGGGTTTCTCGCTCGGGCAGGTAGGCGGCGAATACCAGCCCGGTGGACGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCT                                                                                                                                                     >  4:305544/1‑149                                                                               CGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAG                                                                                                 >  7:3073/1‑124                                                                               CGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAG                                                                                                 <  8:3073/124‑1                                                                                         AACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTGCCGTGGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGAGCGACAGGGAACTGGC                                                              >  4:273632/1‑149                                                                                                                         GGTGACCGCGCGCACGGCAGGTTCGATGCTGCCGTTGCTCAGTTCGTCCACCGTGCTGGTATTCGACGACTACCTGCCCGAGCGAGAAACCCATTAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACA                              <  3:273632/149‑1                                                                                                                                                     CTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGG  <  5:296423/149‑1                                                                                                                                                                                                                                                                                                           CAAAGCGGCCAGTTCCCTGTCGCGCAGCTCCTGGGTTTCTCGCTCGGGCAGGTAGGCGGCGAATACCAGCCCGGTGGACGAACTGAGCAACGGCAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245115‑5244966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGG  >  NC_002947/5245022‑5245168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.