New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5244966 =	42 (0.800)	4 (0.080)	4/246	NT	8.7%	coding (373/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	5245022 =	43 (0.840)					coding (429/834 nt)	hmgR	Hmg transcriptional repressor

GCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGG  >  NC_002947/5244879‑5245168                                                                                                                                                |                                                                                                                                                   gccagttccctgtcgctcagctcctgggtttctcgctcgggcaggtaggcggcgaataccagcccggtggacgaactgagccacggcAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGtt                                                                                                                                               >  4:273632‑M1/88‑149 (MQ=255)           cGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAATCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCg                                                                                                                                     >  5:149819/1‑149 (MQ=255)           cGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCg                                                                                                                                     >  3:305544/1‑149 (MQ=255)                        gCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTgg                                                                                                                        >  8:77724/1‑149 (MQ=255)                          gagaTGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAATCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTa                                                                                                                      <  6:149819/149‑1 (MQ=255)                            gaTGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGc                                                                                                                           >  8:182249/1‑142 (MQ=255)                            gaTGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGc                                                                                                                           <  7:182249/142‑1 (MQ=255)                               gAGCTCAACGAAAGCTGCCTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTcgc                                                                                                                 >  1:245548/1‑149 (MQ=255)                                    ctcgggcaggtaggcggcgaataccagcccggtggacgaactgagcaacggcAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCg                                                                                                                                     <  8:3073‑M1/72‑1 (MQ=255)                                    ctcgggcaggtaggcggcgaataccagcccggtggacgaactgagcaacggcAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCg                                                                                                                                     >  7:3073‑M1/53‑124 (MQ=255)                                      aCGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTAc                                                                                                          <  3:259741/149‑1 (MQ=255)                                      aCGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTAc                                                                                                          >  4:259741/1‑149 (MQ=255)                                        gAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTa                                                                                                                      >  6:291400/1‑135 (MQ=255)                                        gAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTa                                                                                                                      <  5:291400/135‑1 (MQ=255)                                              tgctTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGccc                                                                                                    >  7:191228/1‑147 (MQ=255)                                               gctTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                                 >  8:191618/1‑149 (MQ=255)                                                ctTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGCAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCAGGTAGGCGGCGAATACCAGCCcggt                                                                                                 <  7:258825/148‑3 (MQ=255)                                                cctCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgagc                                                                                                <  2:245548/147‑1 (MQ=255)                                                       gCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                                 >  2:91154/1‑141 (MQ=255)                                                       gCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                                 <  1:91154/141‑1 (MQ=255)                                                                ggCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCt                                                                                >  1:89056/1‑149 (MQ=255)                                                                 gCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgagcgag                                                                                             <  7:312792/135‑1 (MQ=255)                                                                 gCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgagcgag                                                                                             >  8:312792/1‑135 (MQ=255)                                                                   aaCCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTg                                                                                                                         <  6:264352/105‑1 (MQ=255)                                                                   aaCCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTg                                                                                                                         >  5:264352/1‑105 (MQ=255)                                                                   aaCCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTgcg                                                                             >  8:39317/1‑149 (MQ=255)                                                                      cAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGa                                                                          >  5:74228/1‑149 (MQ=255)                                                                       aGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGa                                                                          >  2:203633/1‑148 (MQ=255)                                                                       aGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGAc                                                                         <  1:203633/149‑1 (MQ=255)                                                                        cgaactgagcaacggcagcaccgaaccgatctgggtcaccacggtgaccgcgcgcacggcaggttcgatgctGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                                 <  8:3073‑M2/52‑1 (MQ=255)                                                                        cgaactgagcaacggcagcaccgaaccgatctgggtcaccacggtgaccgcgcgcacggcaggttcgatgctGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                                 >  7:3073‑M2/73‑124 (MQ=255)                                                                               aCGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACt                                                                 <  7:124927/149‑1 (MQ=255)                                                                                  gtggtAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGc                                                              <  7:77724/149‑1 (MQ=255)                                                                                  gtggtAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGc                                                              <  8:191228/149‑1 (MQ=255)                                                                                  aacggcagcaccgaaccgatctgggtcaccacggtgaccgcgcgcacggcaggttcgatgctGCCGTGGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGAGCGACAGGGAACTGGc                                                              >  4:273632‑M2/63‑149 (MQ=255)                                                                                      tAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCt                                                          >  6:296423/1‑149 (MQ=255)                                                                                        AGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCttt                                                        >  4:305544‑M1/1‑149 (MQ=255)                                                                                         GCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTg                                                       <  5:364112‑M1/149‑1 (MQ=255)                                                                                                        tGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGc                                                                                 >  3:308965/1‑108 (MQ=255)                                                                                                        tGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGc                                                                                 <  4:308965/108‑1 (MQ=255)                                                                                                          cgcgcgGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGa                                      <  6:364112/149‑1 (MQ=255)                                                                                                          atctgggTCACCACGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGa                                      >  3:31212/6‑149 (MQ=255)                                                                                                                  ggtgaccgcgcgcacggcaggttcgatgctGCCGTTGCTCAGTTCGTCCACCGTGCTGGTATTCGACGACTACCTGCCCGAGCGAGAAACCCATTAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATcaca                              <  3:273632‑M2/119‑1 (MQ=255)                                                                                                                   aCCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATcaca                              <  6:74228/148‑1 (MQ=255)                                                                                                                          tgACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACActgctg                      <  7:39317/149‑1 (MQ=255)                                                                                                                           gACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTAt                                  >  3:128733/1‑136 (MQ=255)                                                                                                                           gACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTAt                                  <  4:128733/136‑1 (MQ=255)                                                                                                                            aCCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTgg                     <  2:89056/148‑1 (MQ=255)                                                                                                                              ccAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCg                  <  7:191618/149‑1 (MQ=255)                                                                                                                              ccAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCg                  >  3:58741/1‑149 (MQ=255)                                                                                                                                     ggttcggtGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAACCCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACGGCTGGCCGGCATGcg           >  4:234319/1‑149 (MQ=255)                                                                                                                                      gttcggtGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCcgc          >  6:260786/1‑149 (MQ=255)                                                                                                                                           gtGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGaa       >  8:287926/1‑147 (MQ=255)                                                                                                                                              ctGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAggg  <  5:296423‑M2/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   GCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGCGAAAAGGG  >  NC_002947/5244879‑5245168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.