| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5272705 = | 57 (1.080) | 5 (0.100) | 5/242 | NT | 9.2% | coding (656/708 nt) | PP_4647 | transcriptional regulator, LuxR family |
| ? | NC_002947 | 5272751 = | 45 (0.890) | coding (702/708 nt) | PP_4647 | transcriptional regulator, LuxR family | |||||
TGGCGTCTGGCTCGGGTACGAAACTGCCCGTTGCGGTTCGCGCCGGGCTTTGCCGGGCGATTCTACAGGGCTTTGCCCGAGGTCGCAGGTTCGAAGATCAGATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5272854‑5272705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGAC > NC_002947/5272751‑5272889 TGGCGTCTGGCTCGGGTACGAAACTGCCCGTTGCGGTTCGCGCCGGGCTTTGCCGGGCGATTCTACAGGGCTTTGCCCGAGGTCGCAGGTTCGAAGATCAGATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCT < 8:224277/149‑1 GTCTGGCTCGGGTACGAAACTGCCCGTTGCGGTTCGCGCCGGGCTTTGCCGGGCGATTCTACAGGGCTTTGCCCGAGGTCGCAGGTTCGAAGATCAGATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGG < 3:89275/143‑1 GTCTGGCTCGGGTACGAAACTGCCCGTTGCGGTTCGCGCCGGGCTTTGCCGGGCGATTCTACAGGGCTTTGCCCGAGGTCGCAGGTTCGAAGATCAGATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGG > 4:89275/1‑143 GATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGA > 5:22621/1‑149 CAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGC > 8:161730/1‑148 GCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCAT > 5:101535/1‑149 CCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCAT > 3:222989/1‑149 AATGGCAATGGCTCCGGCCTTG‑TTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCAC < 6:22621/149‑1 G‑TTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGAC < 7:161730/147‑1 TGGCGTCTGGCTCGGGTACGAAACTGCCCGTTGCGGTTCGCGCCGGGCTTTGCCGGGCGATTCTACAGGGCTTTGCCCGAGGTCGCAGGTTCGAAGATCAGATCCAGCCACGCAAGGCGGCAATGGCAATGGCTCCGGCCTTG‑TTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5272854‑5272705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGAC > NC_002947/5272751‑5272889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |