| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5272705 = | 57 (1.080) | 5 (0.100) | 5/242 | NT | 9.2% | coding (656/708 nt) | PP_4647 | transcriptional regulator, LuxR family |
| ? | NC_002947 | 5272751 = | 45 (0.890) | coding (702/708 nt) | PP_4647 | transcriptional regulator, LuxR family | |||||
CTGCCGCCGGCAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGACCTGATCCGC > NC_002947/5272606‑5272898 | tctggctcgggtacgaaactgcccgttgcggttcgcgccgggctttgccgggcgattctacagggctttgcccgaggtcgcaggttcgaagatcagatcCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGgatc > 5:22621‑M1/100‑149 (MQ=255) tGCCGCCGGCAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGgatc > 2:72404/1‑148 (MQ=255) ccgccgGCAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCTAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGgatc < 1:72404/146‑1 (MQ=255) ccgccgGCAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGTCTGgatc < 5:254389/146‑1 (MQ=255) cAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGa < 7:271/149‑1 (MQ=255) cGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGc < 7:94393/149‑1 (MQ=255) cGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGc > 6:9523/1‑149 (MQ=255) gCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCg < 6:290063/149‑1 (MQ=255) gCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGAcc > 2:313469/1‑149 (MQ=255) cctccctcCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCaaa < 3:272303/148‑1 (MQ=255) ccTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAg < 4:90399/149‑1 (MQ=255) ccATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCggg > 6:139165/1‑141 (MQ=255) ccATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCggg < 5:139165/141‑1 (MQ=255) ccATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGccc > 5:91166/1‑149 (MQ=255) cATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCt < 6:91166/149‑1 (MQ=255) cATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCt < 7:298985/149‑1 (MQ=255) cATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCATCGAACCTGCGACCTCGGGCAAAGccc < 7:130269/148‑1 (MQ=255) gCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATc < 1:313469/148‑1 (MQ=255) tGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGc > 6:138708/1‑120 (MQ=255) tCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCg > 5:254552/1‑149 (MQ=255) cAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCt < 3:55811/133‑1 (MQ=255) cAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCt > 4:55811/1‑133 (MQ=255) cAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGc > 6:140419/1‑148 (MQ=255) aaaGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCa > 7:8326/1‑148 (MQ=255) gTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGgc < 8:8326/149‑1 (MQ=255) tCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTa < 1:11575/126‑1 (MQ=255) tCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTa > 2:11575/1‑126 (MQ=255) aaTTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGgcgc > 5:108302/1‑148 (MQ=255) atatCAGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCa > 7:269327/1‑149 (MQ=255) cGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACggg > 3:278312/1‑149 (MQ=255) cGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACggg > 1:196158/1‑149 (MQ=255) cGTGATCACCAAGACCATCGCAGCCAACCAGGCCGGAGGCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGtt < 8:269327/149‑1 (MQ=255) gTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGtt < 6:108302/148‑1 (MQ=255) tGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACg < 8:108173/140‑1 (MQ=255) tGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACg > 7:108173/1‑140 (MQ=255) aTCACCAAGACCAACGCAGCCAACAAGTCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCg < 6:254552/148‑1 (MQ=255) ccAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACgg < 1:290215/135‑1 (MQ=255) ccAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACgg > 2:290215/1‑135 (MQ=255) cAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTAccc > 3:314327/1‑148 (MQ=255) gACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCg < 1:59333/105‑1 (MQ=255) gACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCg > 2:59333/1‑105 (MQ=255) gACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGc < 4:278312/149‑1 (MQ=255) gACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGc < 5:140419/149‑1 (MQ=255) cAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAg > 6:154250/1‑149 (MQ=255) gatccagccacgcaaggcggcaatggcaatggctccggccttgttggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGa > 5:22621‑M2/51‑149 (MQ=255) aCGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCa > 5:142588/1‑146 (MQ=255) aCGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCa < 6:142588/146‑1 (MQ=255) cagccacgcaaggcggcaatggcaatggctccggccttgttggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGc > 8:161730‑M2/47‑148 (MQ=255) AGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCa < 8:224277‑M1/149‑1 (MQ=255) gccacgcaaggcggcaatggcaatggctccggccttgttggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCAt > 5:101535‑M2/45‑149 (MQ=255) ccacgcaaggcggcaatggcaatggctccggccttgcgtggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCAt > 3:222989‑M2/45‑149 (MQ=255) CCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGAc > 4:89275‑M1/1‑143 (MQ=255) CCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGAc < 3:89275‑M1/143‑1 (MQ=255) gccattgccattGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGaccac < 4:314327/149‑1 (MQ=255) aatggcaatggctccggccttgttggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGaccac < 6:22621‑M2/120‑1 (MQ=255) ttgccattgccGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCAcccc > 8:123469/1‑148 (MQ=255) ttgccGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGcc > 5:308187/1‑149 (MQ=255) gCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGc > 6:72380/1‑104 (MQ=255) gCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGc < 5:72380/104‑1 (MQ=255) gttggctgGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGAc < 7:161730‑M2/139‑1 (MQ=255) gatctgatctTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGACCTGATCCGc < 6:101535/148‑1 (MQ=255) | CTGCCGCCGGCAAGACCGCTGCCGATGTTGCCTCCATCCTCTCGCTGTCGCAAAGCACGGTCAATTTCCATATCCGCAGCGTGATCACCAAGACCAACGCAGCCAACAAGGCCGGAGCCATTGCCATTGCCGCCTTGCGTGGCTGGATCTGATCTTCGAACCTGCGACCTCGGGCAAAGCCCTGTAGAATCGCCCGGCAAAGCCCGGCGCGAACCGCAACGGGCAGTTTCGTACCCGAGCCAGACGCCATGCCCCTGTTGACCACCCCCTACGCCGAACTCGACCTGATCCGC > NC_002947/5272606‑5272898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |