| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5290472 = | 71 (1.340) | 4 (0.080) | 4/242 | NT | 5.3% | coding (70/882 nt) | PP_4664 | LysR family transcriptional regulator |
| ? | NC_002947 | 5290501 = | 74 (1.470) | coding (99/882 nt) | PP_4664 | LysR family transcriptional regulator | |||||
TGGCTGCCGGCAGTGACAGATGGCTGCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5290505‑5290472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGCCAGGCACTCTTGCAGCATGCACGGCTGATAACGCAGCAGGTCGAACGCCTGCAG > NC_002947/5290501‑5290645 TGGCTGCCGGCAGTGACAGATGGCTGCGGCCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGC > 5:335722/1‑125TGGCTGCCGGCAGTGACAGATGGCTGCGGCCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGC < 6:335722/125‑1 GCTGCCGGCAGTGACAGATGGCTGCGGCCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACC > 7:321201/1‑94 GCTGCCGGCAGTGACAGATGGCTGCGGCCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACC < 8:321201/94‑1 CCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGCCAGGCACTCTTGCAGCATGCACGGCTGATAACGCAGCAGGTCGAACGCCTGC < 8:194730/148‑1 CCGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGCCAGGCACTCTTGCAGCATGCACGGCTGATAACGCAGCAGGTCGAACGCCTG > 7:3383/1‑147 CGGCAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGCCAGGCACTCTTGCAGCATGCACGGCTGATAACGCAGCAGGTCGAACGCCTGCAG < 5:124251/149‑1 TGGCTGCCGGCAGTGACAGATGGCTGCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5290505‑5290472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcAGCCAGTGCGCGCATTCGCGCCATGGAAGCATCACTGGGCATTCCCTTGCTGGAACGTAACCGCCGTGGCGTACAACCAACGCCGGCTGGCCAGGCACTCTTGCAGCATGCACGGCTGATAACGCAGCAGGTCGAACGCCTGCAG > NC_002947/5290501‑5290645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |