New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5329487 =	66 (1.250)	4 (0.080)	3/242	NT	6.5%	coding (120/345 nt)	PP_4690	Rieske 2Fe‑2S family protein
	?	NC_002947	5329522 =	53 (1.050)					coding (155/345 nt)	PP_4690	Rieske 2Fe‑2S family protein

CTGCAACTGCTCACCCTCACAGGGGCCTGCCACGCATTCGCCGCTTTCTATCAGGAACAGCGCACCGTGATGGGCGCAGTGGATGAGGCTGGCGCTGTCATCCAGAAACGCGTCCTCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5329637‑5329487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGGGCTGCCACGAAGACAGCCAGGG  >  NC_002947/5329522‑5329666                                                                                                                                                                                                                                                                                                          CTGCAACTGCTCACCCTCACAGGGGCCTGCCACGCATTCGCCGCTTTCTATCAGGAACAGCGCACCGTGATGGGCGCAGTGGATGAGGCTGGCGCTGTCATCCAGAAACGCGTCCTCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGC                                                                                                                                                     <  6:311515/149‑1                                                                                                                   CTCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCT                                                   >  7:171098/1‑133                                                                                                                   CTCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCT                                                   <  8:171098/133‑1                                                                                                                    TCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTG                                  >  1:277348/1‑149                                                                                                                    TCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTG                                  >  7:283782/1‑149                                                                                                                                                   GGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGT                                                 <  3:208080/103‑1                                                                                                                                                   GGCAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGT                                                 >  4:208080/1‑103                                                                                                                                                    GCAGAGGACCCGTTTCTGGATGACAGCGCCACCCTCATCCACTGCGCCCATCACGGAGCGCTGTTCCTGATACAAAGCGCAGATTGCGTGGGAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGGGCAGCCACGAAGACAGCCAGtg  >  2:30048/1‑147                                                                                                                                                     CAGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGA                                         <  6:288986/109‑1                                                                                                                                                      AGAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGG                        >  4:217246/1‑125                                                                                                                                                       GAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGGGCTG                    <  1:223780/128‑1                                                                                                                                                       GAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGGGCTG                    >  2:223780/1‑128                                                                                                                                                       GAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTG                         <  3:4074/123‑1                                                                                                                                                       GAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTG                         >  4:4074/1‑123                                                                                                                                                                                                                                                                                                          CTGCAACTGCTCACCCTCACAGGGGCCTGCCACGCATTCGCCGCTTTCTATCAGGAACAGCGCACCGTGATGGGCGCAGTGGATGAGGCTGGCGCTGTCATCCAGAAACGCGTCCTCTGCCCAGTTCAGCGGGATGTCCCGGTGCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5329637‑5329487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagAGGACGCGTTTCTGGATGACAGCGCCAGCCTCATCCACTGCGCCCATCACGGTGCGCTGTTCCTGATAGAAAGCGGCGAATGCGTGGCAGGCCCCTGTGAGGGTGAGCAGTTGCAGCCCCTGGGCTGCCACGAAGACAGCCAGGG  >  NC_002947/5329522‑5329666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.