| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5348924 = | 56 (1.060) | 4 (0.080) | 4/240 | NT | 7.9% | coding (1398/2937 nt) | PP_4704 | hypothetical protein |
| ? | NC_002947 | 5348979 = | 40 (0.800) | coding (1453/2937 nt) | PP_4704 | hypothetical protein | |||||
ACGTTCACCTGCTGCCATTTGACGAAGTCGCGGCTCTTGATGGTGTCGAGGGTATGCAACTGGCTGACCTGCGCCTTGCCGGTCACATTGAAGGCCAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5349073‑5348924‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGA > NC_002947/5348979‑5349123 ACGTTCACCTGCTGCCATTTGACGAAGTCGCGGCTCTTGATGGTGTCGAGGGTATGCAACTGGCTGACCTGCGCCTTGCCGGTCACATTGAAGGCCAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCT < 4:337036/149‑1 CCAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGC > 7:28600/1‑138 CCAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGC < 8:28600/138‑1 CAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAAC > 7:148272/1‑148 GAGGTCGCTCGAGAGCATGCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGA < 8:148272/147‑1 GCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGATCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAG < 6:351330/149‑1 GCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAG > 7:110887/1‑149 GCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACCGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGA < 1:244697/149‑1 ACGTTCACCTGCTGCCATTTGACGAAGTCGCGGCTCTTGATGGTGTCGAGGGTATGCAACTGGCTGACCTGCGCCTTGCCGGTCACATTGAAGGCCAGCGGCGCGGTGTTCTTCAGGTCGACCTTGAGGTCGCTCGAGAGCATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5349073‑5348924‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGA > NC_002947/5348979‑5349123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |