New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5348924 =	56 (1.060)	4 (0.080)	4/240	NT	7.9%	coding (1398/2937 nt)	PP_4704	hypothetical protein
	?	NC_002947	5348979 =	40 (0.800)					coding (1453/2937 nt)	PP_4704	hypothetical protein

TGGGCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGA  >  NC_002947/5348838‑5349123                                                                                                                                               |                                                                                                                                                 tGGGCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCaa                                                                                                                                           <  6:18210/149‑1 (MQ=255)   ggCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAAt                                                                                                                                          <  5:42033/148‑1 (MQ=255)   ggCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAAt                                                                                                                                          <  7:145193/148‑1 (MQ=255)    gCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAAtgt                                                                                                                                        <  6:242594/149‑1 (MQ=255)     gccatttgacgaagtcgcggctcttgatggtgtcgagggtatgcaactggctgacctgcgccttgccggtcacattgaaggcCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTgg                                                                                                                                                  <  8:28600‑M1/56‑1 (MQ=255)     gccatttgacgaagtcgcggctcttgatggtgtcgagggtatgcaactggctgacctgcgccttgccggtcacattgaaggcCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTgg                                                                                                                                                  >  7:28600‑M1/83‑138 (MQ=255)          cTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCCGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCgg                                                                                                                                  >  6:264510/1‑149 (MQ=255)                      aCCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGt                                                                                                                      <  7:141/149‑1 (MQ=255)                        ccGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGACATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGt                                                                                                                      >  5:351330/1‑147 (MQ=255)                          gcgACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAgg                                                                                                                       >  2:1692/1‑144 (MQ=255)                          gcgACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAgg                                                                                                                       <  1:294089/144‑1 (MQ=255)                          gcgACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAgg                                                                                                                       >  2:294089/1‑144 (MQ=255)                          gcgACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAgg                                                                                                                       <  1:1692/144‑1 (MQ=255)                                       gCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATAccc                                                                                                     >  8:325293/1‑149 (MQ=255)                                               cccAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAAt                                                                                                                                          <  2:19709/104‑1 (MQ=255)                                                   ggCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATc                                                                                          >  8:20850/1‑148 (MQ=255)                                                    gCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGc                                                                                                                  <  8:80446/123‑1 (MQ=255)                                                       tACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCACGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAagag                                                                                     >  6:94403/1‑149 (MQ=255)                                                       tACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAagag                                                                                     <  6:15402/149‑1 (MQ=255)                                                                  gTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCg                                                                          >  7:74593/1‑149 (MQ=255)                                                                        ccTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCTTCAAAt                                                                    >  8:4341/1‑149 (MQ=255)                                                                         ctgctgGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAAt                                                                    <  7:325293/148‑1 (MQ=255)                                                                         ctgctgGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATg                                                                   <  7:20850/149‑1 (MQ=255)                                                                               gAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGgcag                                                               <  8:74593/147‑1 (MQ=255)                                                                                 gccgcgcAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAgg                                                           <  5:264510/146‑1 (MQ=255)                                                                                       ccagcggcgcggtgttcttcaggtcgaccttgaggtcgctcgagagcatgccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGgc                                                                 >  7:28600‑M2/57‑138 (MQ=255)                                                                                       ccagcggcgcggtgttcttcaggtcgaccttgaggtcgctcgagagcatgccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGgc                                                                 <  8:28600‑M2/82‑1 (MQ=255)                                                                                        cagcggcgcggtgttcttcaggtcgaccttgaggtcgctcgagagcatgccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAAc                                                      >  7:148272‑M2/56‑148 (MQ=255)                                                                                        AGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGt                                                    <  4:337036‑M1/149‑1 (MQ=255)                                                                                                  tctcGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTg                                          >  2:244697/1‑149 (MQ=255)                                                                                                   ctcGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATAccc                                                                                                     <  6:228010/89‑1 (MQ=255)                                                                                                   ctcGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATAccc                                                                                                     >  5:228010/1‑89 (MQ=255)                                                                                                      gAGCGACCTCAAGGTCGACCTGAAGAACACCGCGTCCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGGGAACGTCGACGGCTTGTcc                                       >  1:222559/1‑149 (MQ=255)                                                                                                       gtcGACCTTGAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTa                                     >  5:351570/3‑149 (MQ=255)                                                                                                        gCGACCTCACGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTAc                                    <  5:94403/149‑1 (MQ=255)                                                                                                            ccTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTg                                 >  2:333451/1‑148 (MQ=255)                                                                                                              tCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCAc                              >  5:211542/1‑149 (MQ=255)                                                                                                                gaGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCAc                              <  6:351570/146‑1 (MQ=255)                                                                                                                aaGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACgg                            <  2:222559/149‑1 (MQ=255)                                                                                                                  ggTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACgg                            >  2:299546/1‑147 (MQ=255)                                                                                                                  ggTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACgg                            <  1:299546/147‑1 (MQ=255)                                                                                                                      gaggtcgctcgagagcatgccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGa                         <  8:148272‑M2/122‑1 (MQ=255)                                                                                                                         cTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGctct                   >  5:262453/1‑149 (MQ=255)                                                                                                                            aagaaCACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGt                 <  1:147434/148‑1 (MQ=255)                                                                                                                            aagaaCACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGt                 >  2:147434/1‑148 (MQ=255)                                                                                                                              gaaCACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAACCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGtcga              >  4:261986/1‑149 (MQ=255)                                                                                                                                acacCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGtcgatc            <  6:262453/149‑1 (MQ=255)                                                                                                                                  acCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTTGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGtcgatcga          >  1:331589/1‑149 (MQ=255)                                                                                                                                    cgcg‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTg                  <  2:331632/139‑1 (MQ=255)                                                                                                                                    cgcg‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGtcga              >  6:356454/1‑143 (MQ=255)                                                                                                                                    cgcg‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGtcga              <  5:356454/143‑1 (MQ=255)                                                                                                                                    cgcg‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGCTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTg                  >  1:331632/1‑139 (MQ=255)                                                                                                                                        gccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGATCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAg     <  6:351330‑M2/142‑1 (MQ=255)                                                                                                                                        gccgctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAg     >  7:110887‑M2/8‑149 (MQ=255)                                                                                                                                           gctgGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACCGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGa  <  1:244697‑M2/145‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 TGGGCAAAGCTGGATGTGAGCACCCGCGACATCGACCTGCGTGTAGCCCAGGCCTACATCAGCCCGTTCATCCTGCTGGAGCTGCGCAGCGGCATGCTCTCGAGCGACCTCAAGGTCGACCTGAAGAACACCGCG‑CCGCTGGCCTTCAATGTGACCGGCAAGGCGCAGGTCAGCCAGTTGCATACCCTCGACACCATCAAGAGCCGCGACTTCGTCAAATGGCAGCAGGTGAACGTCGACGGCTTGTCCTACGTGCACGGCGATGCTCTGTCGATCGACAAAGTGA  >  NC_002947/5348838‑5349123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.