New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5441495	68 (1.290)	7 (0.140)	5/238	NT	9.9%	coding (1089/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
	?	NC_002947	= 5441532	64 (1.290)					coding (1052/1653 nt)	PP_4780	acyl‑CoA dehydrogenase

TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5441348‑5441495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcccTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGA  <  NC_002947/5441532‑5441385                                                                                                                                                                                                                                                                                                          TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCCCCGACGTGACCAGCCGGGCAAAATGCGCCGGTTGAGGGTCGTCCAGTTGCTCCAGCGCCTGGCC                                                                                                                                                       >  7:312225/1‑147   CCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCC                                                                                                                                                      <  1:312696/146‑1         AACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGC                                                                                                                                              >  8:176660/1‑148                   ACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCT                                                                                                                                   >  4:98977/1‑149                                            ATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAG                                                                                                          <  3:98977/149‑1                                            ATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAG                                                                                                          <  7:176660/149‑1                                               ATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGC                                                                                                        <  7:6648/148‑1                                                    CGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAG                                                                                                          <  7:258979/141‑1                                                    CGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAG                                                                                                          >  8:258979/1‑141                                                                                                                                                   CCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAA     >  1:92686/1‑147                                                                                                                                                   CCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAA     <  2:92686/147‑1                                                                                                                                                   CCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTG                                              >  5:290835/1‑106                                                                                                                                                   CCTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTG                                              <  6:290835/106‑1                                                                                                                                                    CTGGAAAGCGAGGCTGCGCTGGCCCTGAGCTTGGTCCTGGGCGAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGGTGGTCACGGCGGTGGGCAAGTTCTGGATGTTCAAACGTGCGCCGGCCATGATCAACGA  <  6:256082/149‑1                                                                                                                                                    CTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAAC    >  2:188110/1‑147                                                                                                                                                                                                                                                                                                          TTCCACATAACCCGCGCCACCCAGGCATTCGGCGGCCTCGTTGATCATGGCCGGCGCACGTTTGCAGATCCAGTACTTGCCCACCGCCGTGACCAGCCGGGCAAAATGCGCCTGTTGCGGGTCGTCCAGTTGCTCCAGCGCCTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5441348‑5441495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcccTGGAAAGCGAGGCTGCGCTCGCCCTGAGCTTGCGCATGGGCCAGGCGCTGGAGCAACTGGACGACCCGCAACAGGCGCATTTTGCCCGGCTGGTCACGGCGGTGGGCAAGTACTGGATCTGCAAACGTGCGCCGGCCATGATCAACGA  <  NC_002947/5441532‑5441385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.