New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5533581	56 (1.060)	4 (0.080)	3/234	NT	7.2%	coding (894/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5533633	51 (1.050)					coding (842/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein

CCACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5533428‑5533581 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggtgccgACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGCCGCTTTCAATGGCGCGAAGTCGAAC  <  NC_002947/5533633‑5533497                                                                                                                                                                                                                                                                                                     CCACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCG                                                                                                                                                 <  2:254802/148‑1  CACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGT                                                                                                                                               >  5:308283/1‑149   ACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTG                                                                                                                                              >  3:292782/1‑149   ACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTG                                                                                                                                              >  3:8984/1‑149                                              CCACTTGGCAGCGTCCTCGCCCTTGTTCCACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAG                                                                                                     >  1:197403/1‑147                                                                 CCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACC                                                                                <  2:197403/149‑1                                                                                    CATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACC                                                                                <  5:24179/130‑1                                                                                    CATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACC                                                                                >  6:24179/1‑130                                                                                                                                                     GTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGC                           <  1:151808/118‑1                                                                                                                                                     GTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGC                           >  2:151808/1‑118                                                                                                                                                          GACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGCCGCTTTCAATGGCGCGAAGTCGAAC  >  5:283127/1‑138                                                                                                                                                          GACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGCCGCTTTCAATGGCGCGAAGTCGAAC  <  6:283127/138‑1                                                                                                                                                                                                                                                                                                     CCACTTCTTCTCACCCATGACGGTCTGCACCGGGTTGGCCTTGAGCCACTTGGCAGCGTCCTCGCCCTTGTTCGACTTCGCGCCATTGAAAGCGGCAGCCAGAGCCTGCAGCGAAGCGTAGGCGTACAGGGTGTAGCCCTCAGGTTCGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5533428‑5533581 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggtgccgACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTGGAGGAGTTCCGCAAGGCCGGCACCGAACCTGAGGGCTACACCCTGTACGCCTACGCTTCGCTGCAGGCTCTGGCTGCCGCTTTCAATGGCGCGAAGTCGAAC  <  NC_002947/5533633‑5533497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.