New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5534166 =	46 (0.870)	4 (0.080)	3/242	NT	7.2%	coding (309/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	5534223 =	59 (1.170)					coding (252/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein

GCAGGCAGCGGCTGACAAGATCAACGCCGCTGGTGGCGTGAATGGCGAGAAAATCGTCCTGGTCAAAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5534319‑5534166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccacGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATCTTGTCAGCCGCTGCCTGCGCACCTTTCATGTA  >  NC_002947/5534223‑5534333                                                                                                                                                                                                                                                                           GCAGGCAGCGGCTGAGAAGATCAACGCCGCTGGTGGCGTGAATGGCGAGAAAATCGTCCTGGTCAAAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGG                                                                                                                      <  7:246270/149‑1  CAGGCAGCGGCTGACAAGATCAACGCCGCTGGTGGCGTGAATGGCGAGAAAATCGTCCTGGTCAAAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGG                                                                                                                     >  6:273252/1‑149     GCAGCGGCTGACAAGATCAACGCCGCTGGTGGCGTGAATGGCGAGAAAATCGTCCTGGTCAAAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCA                                                                                                                  <  7:284326/149‑1                                                                                             AAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATCTTGTCAGC                          >  6:123886/1‑149                                                                                             AAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATC                                  >  5:192508/1‑141                                                                                             AAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATC                                  <  6:192508/141‑1                                                                                                                       GTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCACGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATCTTGTCAGCCGCTGCCTGCGCACCTTTCATGTA  <  5:123886/147‑1                                                                                                                                                                                                                                                                           GCAGGCAGCGGCTGACAAGATCAACGCCGCTGGTGGCGTGAATGGCGAGAAAATCGTCCTGGTCAAAGGCGATGACGCCTGTGAACCGAAGCAAGCCGTGGCCGTGGCCAACCGCCTGGTCGATCAGGACAAGGTGATTGGCGTGGTGGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5534319‑5534166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccacGGCTTGCTTCGGTTCACAGGCGTCATCGCCTTTGACCAGGACGATTTTCTCGCCATTCACGCCACCAGCGGCGTTGATCTTGTCAGCCGCTGCCTGCGCACCTTTCATGTA  >  NC_002947/5534223‑5534333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.