| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5663292 | 77 (1.460) | 3 (0.060) | 3/246 | NT | 4.1% | coding (66/1179 nt) | PP_4971 | outer membrane‑bound lytic murein transglycolase A |
| ? | NC_002947 | = 5663318 | 65 (1.270) | coding (92/1179 nt) | PP_4971 | outer membrane‑bound lytic murein transglycolase A | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGGCCTACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5663144‑5663292‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAGTGTCCAGGCCAGGTGGCGCAGGGCAGATTTCATGTGTGCATTCCTGTCATGAGCGAACATGAAGGTTCGCCCCTGTCTTTTATGTGGCTATTGGTGTTTGGTCCAGGGGCAGC < NC_002947/5663318‑5663174 TTCGGCCTACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG > 1:254291/1‑149 CGGCCTACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG < 8:288338/147‑1 TACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG < 1:318891/142‑1 TACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG > 2:318891/1‑142 GACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCGTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAGTGTCCAGG < 2:254291/149‑1 CCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCGTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAG < 7:260030/132‑1 CCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCGTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAG > 8:260030/1‑132 GCCGTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAGTGTCCAGGCCAGGTGGCGCAGGGCAGATTTCATGTGTGCATTCCTGTCATGAGCGAACATGAAGGTTCGCCCCTGTCTTTTATGTGGCTATTGGTGTTTGGTCCAGGGGCAGC > 8:290019/1‑149 TTCGGCCTACGCAAATGGGCGGCCAGTATCGCTGCCCCTGGACCAAACACCAATAGCCACATAAAAGACAGGGGCGAACCTTCATGTTCGCTCATGACAGGAATGCACACATGAAATCTGCCCTGCGCCACCTGGCCTGGACACTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5663144‑5663292‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgTTGCAGCCGGCCAGCAAAGCCAGCACCGGCAGTGTCCAGGCCAGGTGGCGCAGGGCAGATTTCATGTGTGCATTCCTGTCATGAGCGAACATGAAGGTTCGCCCCTGTCTTTTATGTGGCTATTGGTGTTTGGTCCAGGGGCAGC < NC_002947/5663318‑5663174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |