New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5690244 =	50 (0.950)	6 (0.120)	5/240	NT	10.4%	coding (99/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	5690320 =	56 (1.120)					coding (23/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG

TTTCTTGCAGCTTGCCGCTTGCAACTTGCGGCTTCAATCCTACTGGTAGGCGTCTATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5690397‑5690244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  >  NC_002947/5690320‑5690462                                                                                                                                                                                                                                                                                                           TTTCTTGCAGCTTGCCGCTTGCAACTTGCGGCTTCAATCCTACTGGTAGGCGTCTATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGA                                                                                                                                                      >  1:227395/1‑149                                 TTCAATCCTACTGGTAGGCGTCTATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATC                                                                                                                                                    <  1:141919/119‑1                                 TTCAATCCTACTGGTAGGCGTCTATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATC                                                                                                                                                    >  2:141919/1‑119                                                                        AGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGC                                                                                >  7:149965/1‑148                                                                            GATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCT                                                                           >  7:187407/1‑149                                                                            GATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCT                                                                           >  3:131533/1‑149                                                                                   ATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGA                                                                     >  5:187352/1‑148                                                                                                         GCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCT                                              <  8:187407/149‑1                                                                                                                                     AGCTGGCTGCGAGGTGATCACCATCACCTTCAGGGGTTGTTCAATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCT                  <  8:149965/149‑1                                                                                                                                                  GTGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTT     <  6:187352/149‑1                                                                                                                                                    GATCACCATCACC‑TCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  <  4:13575/149‑1                                                                                                                                                     ATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  <  5:217781/149‑1                                                                                                                                                     ATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  <  1:298584/149‑1                                                                                                                                                     ATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGT                             <  2:319577/122‑1                                                                                                                                                     ATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGT                             >  1:319577/1‑122                                                                                                                                                         CCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTT   >  4:293336/1‑144                                                                                                                                                         CCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTT   <  3:293336/144‑1                                                                                                                                                                                                                                                                                                           TTTCTTGCAGCTTGCCGCTTGCAACTTGCGGCTTCAATCCTACTGGTAGGCGTCTATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGCGGGCTGCGAGGTGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5690397‑5690244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  >  NC_002947/5690320‑5690462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.