New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5690244 =	50 (0.950)	6 (0.120)	5/240	NT	10.4%	coding (99/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG
	?	NC_002947	5690320 =	56 (1.120)					coding (23/402 nt)	pilG	pilus biosynthesis/twitching motility protein PilG

AGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  >  NC_002947/5690173‑5690462                                                                                                                                                    |                                                                                                                                               aGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCAGGAATCGTCGatcacca                                                                                                                                                <  6:110985/148‑1 (MQ=255)  gCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGatcaccatc                                                                                                                                              <  8:27166/149‑1 (MQ=255)  agcttgccgcttgcaacttgcggcttcaatcctactggtaggcgtctatggaacaacccctgaaggtgatGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGatcaccatc                                                                                                                                              >  3:131533‑M1/71‑149 (MQ=255)  agcttgccgcttgcaacttgcggcttcaatcctactggtaggcgtctatggaacaacccctgaaggtgatGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGatcaccatc                                                                                                                                              >  7:187407‑M1/71‑149 (MQ=255)    acaTCGACGAAAATGATACTCGGCTGATGGTCGACGATCTACGCCAGCGCATCGAAGCCATCGCAGGCGGTGATCACCTCGCAGCCCGCTTAACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGatcaccatca                                                                                                                                             >  7:86603/1‑148 (MQ=255)       tCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCtt                                                                                                                                         <  6:177777/149‑1 (MQ=255)       gccgcttgcaacttgcggcttcaatcctactggtaggcgtctatggaacaacccctgaaggtgatGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCt                                                                                                                                          >  7:149965‑M1/66‑148 (MQ=255)          acgaAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAg                                                                                                                                      <  7:266175/149‑1 (MQ=255)           cgaAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAgg                                                                                                                                     <  8:86603/149‑1 (MQ=255)                      cTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCAt                                                                                                                          <  2:316278/149‑1 (MQ=255)                       tGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCa                                                                                                                           >  8:162596/1‑147 (MQ=255)                         ggCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGa                                                                                                                       >  7:279092/1‑149 (MQ=255)                               tGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTa                                                                                                                 >  8:168135/1‑149 (MQ=255)                                 gTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGCGGTTGTTCCATAGACGCCTAc                                                                                                                >  8:239382/1‑148 (MQ=255)                                  tCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTAc                                                                                                                >  6:89144/1‑147 (MQ=255)                                            tGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAgg                                                                                                         <  6:332254/144‑1 (MQ=255)                                            tGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAgg                                                                                                         >  5:332254/1‑144 (MQ=255)                                               ccAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGc                                                                                                 <  2:10185/149‑1 (MQ=255)                                                 aGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCg                                                                                               >  4:8601/1‑149 (MQ=255)                                                    gCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCaa                                                                                            <  6:95520/149‑1 (MQ=255)                                                      aTCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGt                                                                                          >  2:227395/1‑149 (MQ=255)                                                          aaGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGc                                                                                       >  7:315834/1‑148 (MQ=255)                                                              cATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCg                                                                                  >  3:291946/1‑149 (MQ=255)                                                              cATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCg                                                                                  <  3:8601/149‑1 (MQ=255)                                                                 aggtgatggtgatcgacgattcccgcacgatccgccgcaccgcgcagatgttgctcggtgaagcgggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGc                                                                                >  7:149965‑M2/84‑148 (MQ=255)                                                                     gatggtgatcgacgattcccgcacgatccgccgcaccgcgcagatgttgctcggtgaagcgggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCt                                                                           >  3:131533‑M2/80‑149 (MQ=255)                                                                     gatggtgatcgacgattcccgcacgatccgccgcaccgcgcagatgttgctcggtgaagcgggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCt                                                                           >  7:187407‑M2/80‑149 (MQ=255)                                                                       cGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTg                                                                          >  6:100197/1‑148 (MQ=255)                                                                       cGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGc                                                                         <  7:162596/149‑1 (MQ=255)                                                                       cGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGc                                                                         <  8:315834/149‑1 (MQ=255)                                                                           GATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGaa                                                                                                   >  2:141919‑M1/1‑119 (MQ=255)                                                                           GATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGaa                                                                                                   <  1:141919‑M1/119‑1 (MQ=255)                                                                            atcgacgattcccgcacgatccgccgcaccgcgcagatgttgctcggtgaagcgggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGa                                                                     >  5:187352‑M2/73‑148 (MQ=255)                                                                             TCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGaaa                                                                   >  1:227395‑M1/1‑149 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTg                                                                          >  3:73535/1‑138 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTg                                                                          <  4:73535/138‑1 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAagcag                                                               <  7:168135/149‑1 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAagcag                                                               >  2:295502/1‑149 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAagcag                                                               >  2:271479/1‑149 (MQ=255)                                                                                 cTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACC‑TCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAagcagc                                                              >  3:13575/1‑149 (MQ=255)                                                                                     cAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCaa                                                                                     <  2:323964/123‑1 (MQ=255)                                                                                     cAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCaa                                                                                     >  1:323964/1‑123 (MQ=255)                                                                                        cccGCTTCAGCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGc                                                                         <  5:108298/132‑1 (MQ=255)                                                                                        cccGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGCCAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGCATTGAAGCCGCAACTTGCAACCGGCAAGCTGc                                                                         >  6:108298/1‑132 (MQ=255)                                                                                          cGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGaa                                                                                                   >  4:151271/1‑104 (MQ=255)                                                                                          cGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGaa                                                                                                   <  3:151271/104‑1 (MQ=255)                                                                                           gCTTCACCGAGCAACATCTGCGCTGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCAt                                                     <  7:239382/149‑1 (MQ=255)                                                                                            cTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATg                                                    <  8:279092/149‑1 (MQ=255)                                                                                               cACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGAt                                                                                                       <  3:161603/95‑1 (MQ=255)                                                                                               cACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGAt                                                                                                       >  4:161603/1‑95 (MQ=255)                                                                                               cACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCAt                                                     >  3:177435/1‑145 (MQ=255)                                                                                               cACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCAt                                                     <  4:177435/145‑1 (MQ=255)                                                                                               cACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATgg                                                   <  8:239276/147‑1 (MQ=255)                                                                                                aCCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAg                                                                                           <  8:13865/106‑1 (MQ=255)                                                                                                aCCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAg                                                                                           >  7:13865/1‑106 (MQ=255)                                                                                                  gccgcaccgcgcagatgttgctcggtgaagcgggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGct                                              <  8:187407‑M2/99‑1 (MQ=255)                                                                                                  cGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGct                                              >  4:169329/1‑149 (MQ=255)                                                                                                   gAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGc                                                                            >  4:325891/1‑118 (MQ=255)                                                                                                   gAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGc                                                                            <  3:325891/118‑1 (MQ=255)                                                                                                        aCATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATAACCATAACATTCAGGGGTTGTTCAATAGAAGCCTAACAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAATCAGCTCGGCGCATGGATGGTGTTTTc                                        >  7:53007/1‑149 (MQ=255)                                                                                                             tGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAg                                   >  2:298584/1‑149 (MQ=255)                                                                                                               cgcgGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCTGTGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGTAAGCTGTAAGAAAGCAGCTCGGTGTATGGATGCTCTTTTCTTGa                                    <  8:53007/146‑1 (MQ=255)                                                                                                               cgcgGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGc                                 >  2:188634/1‑149 (MQ=255)                                                                                                                 cgGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCtt                               <  1:295502/149‑1 (MQ=255)                                                                                                                    tGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTa                            <  4:291946/149‑1 (MQ=255)                                                                                                                    tGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTa                            <  1:271479/149‑1 (MQ=255)                                                                                                                           gATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAg                     <  5:100197/149‑1 (MQ=255)                                                                                                                            aTCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAgg                    <  1:188634/149‑1 (MQ=255)                                                                                                                              agctggctgcgaggtgatcaccATCACCTTCAGGGGTTGTTCAATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCt                  <  8:149965‑M2/127‑1 (MQ=255)                                                                                                                                     gAATCGTCGATCAACATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGAGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCt           >  2:54706/1‑149 (MQ=255)                                                                                                                                      aaTCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTg          >  6:347660/1‑149 (MQ=255)                                                                                                                                         cgtcgATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAt       >  5:227529/1‑149 (MQ=255)                                                                                                                                           tcgATGACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttt     >  7:320874/1‑149 (MQ=255)                                                                                                                                           tcgATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttt     >  8:188637/1‑149 (MQ=255)                                                                                                                                           tcgATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttt     >  6:217781/1‑149 (MQ=255)                                                                                                                                           gtgatcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttt     <  6:187352‑M2/140‑1 (MQ=255)                                                                                                                                             gatcaccATCACC‑TCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTa  <  4:13575‑M2/142‑1 (MQ=255)                                                                                                                                              atcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGt                             <  2:319577‑M2/116‑1 (MQ=255)                                                                                                                                              atcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGt                             >  1:319577‑M2/7‑122 (MQ=255)                                                                                                                                              atcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTa  <  1:298584‑M2/143‑1 (MQ=255)                                                                                                                                              atcaccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTa  <  5:217781‑M2/143‑1 (MQ=255)                                                                                                                                                  ccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttttt   <  3:293336‑M2/142‑1 (MQ=255)                                                                                                                                                  ccATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCAttttt   >  4:293336‑M2/3‑144 (MQ=255)                                                                                                                                                    |                                                                                                                                               AGCACATCGACGAAAATGATACTGGGCTGATGGTCGACGATCTTGGCCAGGGCATCGAAGCCATCGCTGGCGGTGATCACCTCGCAGCCCGCTTCACCGAGCAACATCTGCGCGGTGCGGCGGATCGTGCGGGAATCGTCGATCACCATCACCTTCAGGGGTTGTTCCATAGACGCCTACCAGTAGGATTGAAGCCGCAAGTTGCAAGCGGCAAGCTGCAAGAAAGCAGCTCGGCGCATGGATGCTCTTTTCTTGAGGCTTGTAGCTCAAGGCTTGCAGCTGCATTTTTA  >  NC_002947/5690173‑5690462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.