New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5958224	53 (1.000)	3 (0.060)	3/236	NT	6.4%	coding (1628/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	= 5958279	39 (0.800)					coding (1683/2856 nt)	cyaA	adenylate cyclase

AGCACTTCAGCCCGATGAAGCGCTGCCGCGAGCTACTCGAACTGCTGACCTGGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5958074‑5958224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggctgCAAAAGGCGCACTTCGCTGACGGTCGGCAAG‑GGCAGGGGGATACTTTGCCGCAGACAGCCCAGCAGGTTGAACAGCTCGAACTCCCCGAGGTCGCTGGCCCCTGGATGCAGCGCCATGCGGGTGCTGCTGTCGATCACCCCG  <  NC_002947/5958279‑5958138                                                                                                                                                                                                                                                                                                        AGCACTTCAGCCCGATGAAGCGCTGCCGCGAGCTACTCGAACTGCTGACCTGGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGC                                                                                                                                                   >  8:267192/1‑149  GCACTTCAGCCCGATGAAGCGCTGCCGCGAGCTACTCGAACTGCTGACCTGGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCT                                                                                                                                                  <  7:267192/149‑1                                                    GGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGC                                                                                                                                                        >  3:314682/1‑93                                                    GGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGC                                                                                                                                                        <  4:314682/93‑1                                                               AACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGCAAAAGGCGCACTTCGCTGACGGTCGGCAAG‑GGCAGGGGGATACTTTGCCGCAGACAGCC                                                                                    <  1:291651/149‑1                                                                   GGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGCAAAAGGCGCACTTCGCTGACGGTCGGCAAG‑GGCAGGGGGATACTTTGCCGCAGACAGCCCAGC                                                                                <  3:30627/149‑1                                                                      TGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGCAAAAGGCGCACTTCGCTGACGGTCGGCAAGTGGCAGGGGGATACTTTGCCGCAGACAGCCCAGCAG                                                                              <  1:53623/149‑1                                                                                                                                                 TGGGCTGCAAAAGGCGCACTTCGCTGACGGTCGGCAAG‑GGCAGGGGGATACTTTGCCGCAGACAGCCCAGCAGGTTGAACAGCTCGAACTCCCCGAGGTCGCTGGCCCCTGGATGCAGCGCCATGCGGGTGCTGCTGTCGATCACCCCG  >  4:256824/1‑149                                                                                                                                                                                                                                                                                                        AGCACTTCAGCCCGATGAAGCGCTGCCGCGAGCTACTCGAACTGCTGACCTGGGCCCATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5958074‑5958224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggctgCAAAAGGCGCACTTCGCTGACGGTCGGCAAG‑GGCAGGGGGATACTTTGCCGCAGACAGCCCAGCAGGTTGAACAGCTCGAACTCCCCGAGGTCGCTGGCCCCTGGATGCAGCGCCATGCGGGTGCTGCTGTCGATCACCCCG  <  NC_002947/5958279‑5958138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.