New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5958224	53 (1.000)	3 (0.060)	3/236	NT	6.4%	coding (1628/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	= 5958279	39 (0.800)					coding (1683/2856 nt)	cyaA	adenylate cyclase

ATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGAAAACCTGGTGCT  >  NC_002947/5958131‑5958422                                                                                                                                                      |                                                                                                                                                aTCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTGCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTg                                                                                                                                                 <  3:65630/149‑1 (MQ=255)        cGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGcagccca                                                                                                                                          >  4:256824‑M2/1‑142 (MQ=255)            gTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGTAGCCCAGCGt                                                                                                                                      >  4:285431/1‑149 (MQ=255)               aTCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGc                                                                                                                                   >  4:344264/1‑149 (MQ=255)                     agcagcACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGa                                                                                                                             <  3:344264/149‑1 (MQ=255)                       cagcaCCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAgg                                                                                                                           <  6:202011/149‑1 (MQ=255)                        agcaCCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGCCCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTGGCGGATGAGgt                                                                                                                          >  7:321754/1‑149 (MQ=255)                                cATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGc                                                                                                                  <  2:324789/149‑1 (MQ=255)                                     cgcTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGTAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTc                                                                                                             <  3:285431/149‑1 (MQ=255)                                      gcTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTc                                                                                                             >  2:176900/1‑148 (MQ=255)                                       cTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCaa                                                                                                           >  7:191174/1‑149 (MQ=255)                                            tCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGtgttgt                                                                                                                     <  1:322121/134‑1 (MQ=255)                                            tCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGtgttgt                                                                                                                     >  2:322121/1‑134 (MQ=255)                                                 gggCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTc                                                                                                 <  8:191174/149‑1 (MQ=255)                                                   gCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGa                                                                                               <  5:127324/149‑1 (MQ=255)                                                                 ggAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGtgtt                                                                                                                       <  6:117180/111‑1 (MQ=255)                                                                     ttCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACcg                                                                             >  6:336840/1‑149 (MQ=255)                                                                        gAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGtt                                                                                                                                     <  3:34630/90‑1 (MQ=255)                                                                        gAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGtt                                                                                                                                     >  4:34630/1‑90 (MQ=255)                                                                            tGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCt                                                                       >  1:92556/1‑148 (MQ=255)                                                                             gTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTg                                                                      >  5:336936/1‑148 (MQ=255)                                                                              ttCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGaa                                                                    >  6:350604/1‑149 (MQ=255)                                                                              ttCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGaa                                                                    >  5:330834/1‑149 (MQ=255)                                                                              tgccaCCTGCGGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGGCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGaa                                                                    <  8:321754/145‑1 (MQ=255)                                                                                    ctgctgGGCTGTCTGCGGCAAAGTATCCCCCTGCCACTTGCCGACCGTCAGCGAAGTGCGCCTTTTGcagcccagcaggttgaacagctcgaactccccgaggtcgctggcccctggatgcagcgccatgcgggtgctgctgtcgatca                                                               <  1:53623‑M2/149‑83 (MQ=255)                                                                                    ctgctgGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCt                                                              <  2:92556/149‑1 (MQ=255)                                                                                     tgctgGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTTTTGTTGCTGGTCAACGTCg                                                                                                      <  4:62026/108‑1 (MQ=255)                                                                                     tgctgGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTATTGTTGCTGGTCAACGTCg                                                                                                      >  3:62026/1‑108 (MQ=255)                                                                                      gctgGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGcagcccagcaggttgaacagctcgaactccccgaggtcgctggcccctggatgcagcgccatgcgggtgctgctgtcgatcaccc                                                            <  3:30627‑M2/149‑86 (MQ=255)                                                                                          ggCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGcagcccagcaggttgaacagctcgaactccccgaggtcgctggcccctggatgcagcgccatgcgggtgctgctgtcgatcaccccgtt                                                        <  1:291651‑M2/149‑90 (MQ=255)                                                                                          ggCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCtgatga                                                         <  6:336936/148‑1 (MQ=255)                                                                                          ggCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCtgat                                                           <  6:330834/146‑1 (MQ=255)                                                                                          ggCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGAc                                                        >  3:18649/1‑149 (MQ=255)                                                                                          ggCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGAc                                                        <  1:176900/149‑1 (MQ=255)                                                                                             tGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACca                                                      >  5:91094/1‑148 (MQ=255)                                                                                                   cGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACagag                                                 <  6:91094/147‑1 (MQ=255)                                                                                                   cGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACaga                                                  <  5:350604/146‑1 (MQ=255)                                                                                                      cAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCtgat                                                           >  6:155933/1‑134 (MQ=255)                                                                                                      cAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCtgat                                                           <  5:155933/134‑1 (MQ=255)                                                                                                        aaGTATCCACCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCAGCTGCGCCACCACCTCGACCTGAACGTGCTGATCACCAAAGAGCGCAcc                                           >  2:15488/1‑148 (MQ=255)                                                                                                               ccccTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCGGATGAGGTGTTGTTGCTg                                                                                                                <  7:129182/72‑1 (MQ=255)                                                                                                               ccccTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCGGATGAGGTGTTGTTGCTg                                                                                                                >  8:129182/1‑72 (MQ=255)                                                                                                                cccTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCt                                                                                         <  4:110915/94‑1 (MQ=255)                                                                                                                cccTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCt                                                                                         >  3:110915/1‑94 (MQ=255)                                                                                                                            ccGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAAc                                                                   >  6:185811/1‑105 (MQ=255)                                                                                                                            ccGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAAc                                                                   <  5:185811/105‑1 (MQ=255)                                                                                                                                   tCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTgcgc                <  4:18649/149‑1 (MQ=255)                                                                                                                                               gcCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGACGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGAAAACCTGGTg    >  6:325226/1‑149 (MQ=255)                                                                                                                                                  ttttGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGAAAACCTGGTGCt  >  2:225106/1‑148 (MQ=255)                                                                                                                                                      gCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGaaa            <  7:315080/134‑1 (MQ=255)                                                                                                                                                      gCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGaaa            >  8:315080/1‑134 (MQ=255)                                                                                                                                                      |                                                                                                                                                ATCGCAACGGGGTGATCGACAGCAGCACCCGCATGGCGCTGCATCCAGGGGCCAGCGACCTCGGGGAGTTCGAGCTGTTCAACCTGCTGGGCTGTCTGCGGCAAAGTATCCCCCTGCC‑CTTGCCGACCGTCAGCGAAGTGCGCCTTTTGCAGCCCAGCGTTGCCGATGAGGTGTTGTTGCTGGTCAACGTCGGCGTCGACCCGCTGCGCCACCACCGCGACCTGAACGTGCTGATGACCACAGAGCGCACCGACGCGTTGAGCTACGCTGGCGTGCGCGAAAACCTGGTGCT  >  NC_002947/5958131‑5958422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.