New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6169468	36 (0.680)	7 (0.140)	7/242	NT	16.8%	coding (827/1182 nt)	PP_5408	hypothetical protein
	?	NC_002947	= 6169478	35 (0.700)					coding (817/1182 nt)	PP_5408	hypothetical protein

GAGTGAGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6169317‑6169468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaggcCATTACTTAAGCCTAGAATCGGGTTCAGCACTGATTGACTCTTGTTGGAGCACTTATCAAATTCGCAGTGATTACTTTGATCACTACATCGAAGAAGATTACCGCCATGGAGTTGCCTTATGGTCACTCCGCGATTTTGACCACTA  <  NC_002947/6169478‑6169333                                                                                                                                                                                                                                                                                                            GAGTGAGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTA                                                                                                                                                       <  2:124199/149‑1  AGTGAGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAG                                                                                                                                                      <  6:106472/149‑1   GTGTGTGTTCTTTGTAGTGGTCAATATCTCGTAGTGACCATATGTCTAATCGATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGAGAATTTGATAAGTGCTCCAACAAGAGTCATTCAGTGCTGAACCCGATTCTAGG                                                                                                                                                     <  2:282272/149‑1                     GGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAG                                                                                                                                    <  5:66738/148‑1                                           TAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTC                                                                                                                                                         >  1:278001/1‑105                                           TAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTC                                                                                                                                                         <  2:278001/105‑1                                                            GGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATC                                                                                                                                <  5:331621/113‑1                                                            GGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATC                                                                                                                                >  6:331621/1‑113                                                                                      AAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATCG                                                                                                                               <  5:98296/88‑1                                                                                      AAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATCG                                                                                                                               >  6:98296/1‑88                                                                                        GTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATCGG                                                                                                                              <  7:318412/87‑1                                                                                        GTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCCATTACTTAAGCCTAGAATCGG                                                                                                                              >  8:318412/1‑87                                                                                                                                                   CTAGGCCATTACTTAAGCCTAGAATCGGGTTCAGCACTGATTGACTCTTGTTGGAGCACTTAACAAATTCACAGTGATTACTTTGATCACTACATCGAAGAAGATTACCGCCATGGAGTTGCCTTATGGTCACTCCGCCATATTCACC      >  5:262176/1‑148                                                                                                                                                    TAGGCCATTACTTAAGCCTAGAATCGGGTTCAGCACTGATTGACTCTTGTTGGAGCACTTATCAAATTCGCAGTGATTACTTTGATCA                                                                 <  6:142494/88‑1                                                                                                                                                      gtCCATTACTTAAGCCTAGAATCGGGTACAGCACTGATTGACTCTTGTTGGAGCACTTATCAAATTCGCAGTGATTACTTTGATCACTACATCGAAGAAGATTACCGCCATGGAGTTGCCTTATGGTCACTCCGCGATTTTGACCACTA  <  8:308715/147‑1                                                                                                                                                      GGCCATTACTTAAGCCTAGAATCGGGTTCAGCACTGATTGACTCTTGTTGGAGCACTTATCAAATTCGCAGTGATTACTTTGATCACTACATCGAAGAAGATTACCGCCATGGAGTTGCCTTA                            <  2:318115/123‑1                                                                                                                                                                                                                                                                                                            GAGTGAGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6169317‑6169468 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaggcCATTACTTAAGCCTAGAATCGGGTTCAGCACTGATTGACTCTTGTTGGAGCACTTATCAAATTCGCAGTGATTACTTTGATCACTACATCGAAGAAGATTACCGCCATGGAGTTGCCTTATGGTCACTCCGCGATTTTGACCACTA  <  NC_002947/6169478‑6169333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.