| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6169468 | 36 (0.680) | 7 (0.140) | 7/242 | NT | 16.8% | coding (827/1182 nt) | PP_5408 | hypothetical protein |
| ? | NC_002947 | = 6169478 | 35 (0.700) | coding (817/1182 nt) | PP_5408 | hypothetical protein | |||||
AGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAGTGTCAGCTATAAATTCATCAATAGCT > NC_002947/6169322‑6169614 | agtgTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCt < 7:125583/148‑1 (MQ=255) tAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGTACCCGATTCTAGGCTTAAGTAATGgac < 8:308715‑M2/149‑4 (MQ=255) ggTGAATATGGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGTGAATTTGTTAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGgcctag > 5:262176‑M2/1‑142 (MQ=255) ggTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctag < 5:66738‑M1/148‑17 (MQ=255) gTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAgg > 3:198476/1‑148 (MQ=255) gTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAgg > 3:326953/1‑148 (MQ=255) aaTCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGtca < 4:326953/149‑1 (MQ=255) aaTCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGtca < 4:198476/149‑1 (MQ=255) cATAAGGCAACTCCATGGCGGTAATCTTCTTAGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCg > 8:300169/1‑147 (MQ=255) tAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGgcc < 2:318115‑M2/123‑4 (MQ=255) tAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCg > 3:206746/1‑145 (MQ=255) cATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTAt < 4:321082/148‑1 (MQ=255) ggTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatc < 5:331621‑M1/113‑21 (MQ=255) ggTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatc > 6:331621‑M1/1‑93 (MQ=255) tAATCTTCTTAGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAg < 7:300169/149‑1 (MQ=255) gATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATa > 7:312995/1‑147 (MQ=255) gATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATa < 8:312995/147‑1 (MQ=255) tGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGgccta < 6:142494‑M2/88‑6 (MQ=255) tCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTc < 4:206746/149‑1 (MQ=255) aaGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatcg < 5:98296‑M1/88‑22 (MQ=255) aaGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatcg > 6:98296‑M1/1‑67 (MQ=255) aaGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATAAAGCAGGCCATACTGCCGGTCtgctgg > 3:217110/1‑144 (MQ=255) aGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTg > 1:111605/1‑148 (MQ=255) gTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatcgg < 7:318412‑M1/87‑23 (MQ=255) gTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCcattacttaagcctagaatcgg > 8:318412‑M1/1‑65 (MQ=255) tAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTgga < 2:257814/148‑1 (MQ=255) tAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTg > 1:257814/1‑146 (MQ=255) tGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTGTTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAAc > 5:295473/1‑149 (MQ=255) gTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTc < 2:111605/149‑1 (MQ=255) cTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCt > 6:182251/1‑148 (MQ=255) caacaaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTa < 5:182251/147‑1 (MQ=255) caacaaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACg > 6:6139/1‑149 (MQ=255) caaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTaaa < 8:300183/87‑1 (MQ=255) caaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTaaa < 4:3101/87‑1 (MQ=255) caaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTaaa > 7:300183/1‑87 (MQ=255) caaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTaaa > 3:3101/1‑87 (MQ=255) aaGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAACCCCATAACCACGTTCCTTACGCAAt > 2:97780/1‑149 (MQ=255) gagTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAAtt > 5:208173/1‑148 (MQ=255) agTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTc < 4:324974/148‑1 (MQ=255) agTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTc > 3:324974/1‑148 (MQ=255) agTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCa < 6:208173/149‑1 (MQ=255) gTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCa < 5:6139/148‑1 (MQ=255) aTCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAgtgt > 5:236809/1‑148 (MQ=255) aGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAGTGTCAGc > 8:71302/1‑149 (MQ=255) cTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATaa < 1:302615/108‑1 (MQ=255) cTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATaa > 2:302615/1‑108 (MQ=255) aCCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAGTGTCAGCTATAAAt > 8:264328/1‑148 (MQ=255) ccGATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattac < 7:318412‑M2/87‑66 (MQ=255) ccGATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattac > 8:318412‑M2/1‑22 (MQ=255) cGATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactt > 6:98296‑M2/1‑21 (MQ=255) cGATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactt < 5:98296‑M2/88‑68 (MQ=255) gATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatcactacatcgaagaagattacc < 5:331621‑M2/113‑94 (MQ=255) gATTCTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatcactacatcgaagaagattacc > 6:331621‑M2/1‑20 (MQ=255) gATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAGTGTCAGCTATAAATtcatc < 7:264328/149‑1 (MQ=255) cTAGGCcattacttaagcctagaatcgggttcagcactgattgactcttgttggagcacttaacaaattcacagtgattactttgatcactacatcgaagaagattaccgccatggagttgccttatggtcactccgccatattcacc > 5:262176‑M1/1‑6 (MQ=255) cTAGGCTTAAGTAATGgcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatcactacatcgaagaagattaccgccatggagttgccttatggtcactccgcgattttgacc < 5:66738‑M2/148‑133 (MQ=255) tAGGCcattacttaagcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatca < 6:142494‑M1/88‑84 (MQ=255) gtccattacttaagcctagaatcgggtacagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatcactacatcgaagaagattaccgccatggagttgccttatggtcactccgcgattttgaccacta < 8:308715‑M1/147‑147 (MQ=255) ggCcattacttaagcctagaatcgggttcagcactgattgactcttgttggagcacttatcaaattcgcagtgattactttgatcactacatcgaagaagattaccgccatggagttgcctta < 2:318115‑M1/123‑121 (MQ=255) | AGTGTGCTTTGTAGTGGTCAAAATCGCGGAGTGACCATAAGGCAACTCCATGGCGGTAATCTTCTTCGATGTAGTGATCAAAGTAATCACTGCGAATTTGATAAGTGCTCCAACAAGAGTCAATCAGTGCTGAACCCGATTCTAGGCTTAAGTAATGGCCTAGGAAGTCATCAAACCCCTCGTAGATAAGCGCTATTAAATCAAGCAGGCCATACTGCCGGTCTTCGTGGAGGATAAACCCATAACCACGTTCCTTACGCAATTCAGTGTCAGCTATAAATTCATCAATAGCT > NC_002947/6169322‑6169614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |