| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 320890 = | 53 (1.000) | 3 (0.060) | 3/242 | NT | 5.8% | coding (284/1107 nt) | aguA | agmatine deiminase |
| ? | NC_002947 | 320939 = | 47 (0.930) | coding (333/1107 nt) | aguA | agmatine deiminase | |||||
CCACGTAACCCTGGCCAAGGCCATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATGGAGC > NC_002947/320744‑321036 | atcgaaccaccttccagcacaaagccttcggtctggtagcgctggtagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatcta < 5:140129‑M1/1‑1 (MQ=255) tcgaaccaccttccagcacaaagccttcggtctggtagcgctggcagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggagttgaagccccaatctaca < 2:194362‑M1/3‑1 (MQ=255) cACGTAACCCTGGCCAAGGCCATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGacac > 6:228102/1‑149 (MQ=255) gaaccaccttccagcacaaagccttcggtctggtagcgctggcagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagacgccccaggcgttgaagccccaatctACAcc < 4:307791‑M1/5‑1 (MQ=255) acccaccttccagcacaaagccttcggtctggtagcgctggcagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctACACCg < 6:268549‑M1/6‑1 (MQ=255) gCCAAGGCCATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCt < 6:135420/148‑1 (MQ=255) ccAAGGCCATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTc < 3:80463/149‑1 (MQ=255) cATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCt > 8:23611/1‑136 (MQ=255) cATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCt < 7:23611/136‑1 (MQ=255) cATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGACAGTACGAGAACGACC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGtcatc > 5:248914/1‑148 (MQ=255) tGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAAc > 8:47240/1‑148 (MQ=255) ttcggtctggtagcgctggcagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctacac > 6:244301‑M1/122‑125 (MQ=255) ttcggtctggtagcgctggcagcgctccatttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctacac < 5:244301‑M1/4‑1 (MQ=255) ccGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTc > 4:325539/1‑136 (MQ=255) gTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCCGGGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCa > 1:266224/1‑149 (MQ=255) aaCCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGaa < 7:47240/149‑1 (MQ=255) cTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTg > 7:261727/1‑149 (MQ=255) tAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTTAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTc < 8:140397/122‑1 (MQ=255) tAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTc < 6:10610/122‑1 (MQ=255) tAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTc > 5:10610/1‑122 (MQ=255) tCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTa < 5:228102/149‑1 (MQ=255) gTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTg < 7:285048/149‑1 (MQ=255) tctcCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCgg < 2:156248/100‑1 (MQ=255) tctcCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCgg > 1:156248/1‑100 (MQ=255) atttccagcaccttggcggccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTgg > 6:140129‑M1/94‑149 (MQ=255) cgccgGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTgggg < 2:266224/147‑1 (MQ=255) cgccgGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTggg < 8:261727/146‑1 (MQ=255) gccgGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAg > 3:86769/1‑139 (MQ=255) gccgGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAg < 4:86769/139‑1 (MQ=255) gCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAAc > 6:230841/1‑149 (MQ=255) cGAGATCGCCC‑GGCGCCTACTCGACCAGCCGTACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTgg < 6:248914/148‑1 (MQ=255) gccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGgtgt < 8:162489‑M1/49‑1 (MQ=255) gccagttcctcgtcgcggttccagggtgcgtacaggccgccatcgaagccgccccaggcgttgaagccccaatctACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGgtgt > 7:162489‑M1/76‑124 (MQ=255) c‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGgtg < 3:251319/115‑1 (MQ=255) c‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGgtg > 4:251319/1‑115 (MQ=255) ggCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGAt < 3:318972/149‑1 (MQ=255) cATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACg > 7:264293/1‑71 (MQ=255) cATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACg < 8:264293/71‑1 (MQ=255) tgGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGcgac < 5:230841/149‑1 (MQ=255) gTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGa > 1:308676/1‑86 (MQ=255) gTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGa < 2:308676/86‑1 (MQ=255) gTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGcgac > 6:150151/1‑147 (MQ=255) ttGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAg > 7:147550/1‑149 (MQ=255) ttGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAg > 4:246737/1‑149 (MQ=255) aaaTCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGaa > 1:191191/1‑149 (MQ=255) aGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGgc > 4:237715/1‑149 (MQ=255) aGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGAAGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGgc > 5:304623/1‑149 (MQ=255) gCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGgcc < 8:147550/149‑1 (MQ=255) gCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACACACCCTGGAACCGCGACGAGGAACTGgcc > 3:52202/1‑149 (MQ=255) cAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGgccg > 8:270146/1‑149 (MQ=255) cgacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGgccgcc > 8:195339/1‑148 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAAc < 3:219354/84‑1 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAAc > 4:219354/1‑84 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAAc > 4:223849/1‑84 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAAc < 3:223849/84‑1 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTAc < 3:32090/114‑1 (MQ=255) gacgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTAc > 4:32090/1‑114 (MQ=255) cgaTGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAgg > 1:194362/1‑149 (MQ=255) gCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCt > 2:234374/1‑149 (MQ=255) ccTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTg < 3:246737/149‑1 (MQ=255) ccTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTg < 7:195339/149‑1 (MQ=255) ccTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACACACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTg < 4:52202/149‑1 (MQ=255) gggTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGa > 2:32178/1‑148 (MQ=255) gCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATgg < 7:270146/149‑1 (MQ=255) cGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATGGa < 2:191191/149‑1 (MQ=255) tGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGCAACTGGCCGCCAAGGTGCTGGAAATGGAgc < 1:32178/149‑1 (MQ=255) gACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATGGa < 5:265499/146‑1 (MQ=255) gACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATGGa > 6:265499/1‑146 (MQ=255) | CCACGTAACCCTGGCCAAGGCCATTGCCCGTTTCGAACCTGTAACCGTCGCGGTCTCCGCCGGCCAGTACGAGAACGCCC‑GGCGCCAACTCGACCAGCCGAACATTCGTGTGGTTGAAATCAGCAACGACGATGCCTGGGTGCGTGACACCGGCCCTACCTTCGTCATCAACGACCATGGCGAAGTGCGCGGTGTAGATTGGGGCTTCAACGCCTGGGGCGGCTTCGATGGCGGCCTGTACGCACCCTGGAACCGCGACGAGGAACTGGCCGCCAAGGTGCTGGAAATGGAGC > NC_002947/320744‑321036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |