New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 478290	19 (0.360)	6 (0.150)	5/194	NT	34.8%	intergenic (+38/+72)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	= 478325	8 (0.200)					intergenic (+73/+37)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

GTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCG  >  NC_002947/478151‑478431                                                                                                                                            |                                                                                                                                                 gtgGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCt                                                                                                                                        >  6:308458/1‑148 (MQ=255)    ggCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGc                                                                                                                                   >  4:205175/1‑149 (MQ=255)     gCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGcc                                                                                                                                  >  3:43566/1‑149 (MQ=255)       aaGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGccc                                                                                                                                 >  2:238329/1‑148 (MQ=255)            cATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACggg                                                                                                                                          <  3:174554/135‑1 (MQ=255)            cATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACggg                                                                                                                                          >  4:174554/1‑135 (MQ=255)            cATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACggg                                                                                                                                          <  2:210326/135‑1 (MQ=255)            cATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACggg                                                                                                                                          >  1:210326/1‑135 (MQ=255)                gcgcAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGa                                                                                                                        <  3:180377/148‑1 (MQ=255)                 cgcAGCTGTGGCAGGAAGCGCAGATCGATGAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGAtg                                                                                                                      <  1:340782/149‑1 (MQ=255)                  gcAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGAtgt                                                                                                                     <  5:308458/149‑1 (MQ=255)                  gcAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACAGGCCCCCCTCGCCTTTGAGTGCCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGCCCTCTTCGCCGGTAAACCCGCTCCTACagggggcacccaacagaggttgggca                                                                                                                        >  3:254863‑M1/1‑123 (MQ=255)                                aaGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtag                                                                                                        >  7:173086‑M2/1‑144 (MQ=255)                                aaGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtag                                                                                                        <  8:173086‑M2/148‑5 (MQ=255)                                    gcAGATCGATCAGGTACTGGCCCCCGTGGGCTTTGAGTGGCGCGGGTTGCAGTTGACGGCCGCTTGAGCCTGTTTCGGCCTCTTCGCGGGTAAAGCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcg                                                                                                      <  4:254863‑M1/149‑45 (MQ=255)                                    gcAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcg                                                                                                      >  5:47618‑M1/1‑105 (MQ=255)                                     cAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcg                                                                                                      >  5:128169‑M1/1‑104 (MQ=255)                                     cAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcg                                                                                                      <  6:128169‑M1/148‑45 (MQ=255)                                     cAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                  >  3:205175‑M2/1‑139 (MQ=255)                                      aGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcggg                                                                                                    <  6:47618‑M1/149‑47 (MQ=255)                                      aGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTGGAGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                  >  1:238329‑M2/1‑139 (MQ=255)                                         tcgatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtt                                                                                               >  1:105206‑M2/1‑135 (MQ=255)                                           gatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCGACG‑‑ACGGGCTG‑AGCCCCACCGCTGATGTGTGGCCCCTgtaggagcggggttac                                                                                            <  3:203417‑M2/149‑17 (MQ=255)                                                 gTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                  >  8:297851‑M2/1‑127 (MQ=255)                                                 gTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                  <  7:297851‑M2/137‑11 (MQ=255)                                                  tACTGGCCCCCGTGGCCTTTGTGGGGCGCTGGTTTCAGTTTCCGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACT‑‑ACGGGCTG‑AGCCAAACCTCTTATGTGTGCCCCCTgtaggagcgggtttacccgcgaa                                                                                     >  4:203417‑M2/1‑126 (MQ=255)                                                     tGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGAtgt                                                                                                                     <  6:260460/114‑1 (MQ=255)                                                     tGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGAtgt                                                                                                                     >  5:260460/1‑114 (MQ=255)                                                       gCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGTCACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaaga                                                                                   >  1:100293‑M2/1‑123 (MQ=255)                                                          cccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑CCGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                             >  5:156204/1‑149 (MQ=255)                                                                                     cAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTc                                                   <  6:156204/148‑1 (MQ=255)                                                                                      aGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTc                                                   >  5:280175/1‑147 (MQ=255)                                                                                                            tATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                           <  6:280175/149‑1 (MQ=255)                                                                                                                    tctTCGCGGGTAAACCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtgacgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggc                       >  1:100293‑M1/1‑25 (MQ=255)                                                                                                                      ttCGCGGGTAAACCCGCTCCTACagggggcacacataagaggtttggctcagcccgtagtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcggaaactgaaaccagcgccccacaaaggccacgggggccagta                    >  4:203417‑M1/1‑23 (MQ=255)                                                                                                                             gTAACCCCGCTCCTACaggggccacacatcagcggtggggctcagcccgtcgtcggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatc             <  3:203417‑M1/149‑134 (MQ=255)                                                                                                                                aaCCCGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcga           >  1:105206‑M1/1‑13 (MQ=255)                                                                                                                                  cccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatct     <  6:47618‑M2/149‑104 (MQ=255)                                                                                                                                   ccGCTCCTACagggggcacacatcagaggttgggctccagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatct       >  1:238329‑M1/1‑10 (MQ=255)                                                                                                                                   ccGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctg       >  3:205175‑M1/1‑10 (MQ=255)                                                                                                                                   ccGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtac                   <  7:297851‑M1/137‑128 (MQ=255)                                                                                                                                   ccGCTCCTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtac                   >  8:297851‑M1/1‑10 (MQ=255)                                                                                                                                   ccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTg                                                            <  2:159871/93‑1 (MQ=255)                                                                                                                                   ccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTg                                                            >  1:159871/1‑93 (MQ=255)                                                                                                                                    cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctgc   >  5:47618‑M2/1‑44 (MQ=255)                                                                                                                                    cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctg    <  6:128169‑M2/148‑105 (MQ=255)                                                                                                                                    cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctg    >  5:128169‑M2/1‑44 (MQ=255)                                                                                                                                    cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcggctttacccgcgaagaggccgaaacaggctcaagcggccgtcaactgcaacccgcgccactcaaagcccacgggggccagtacctgatcgatctgc   <  4:254863‑M2/149‑106 (MQ=255)                                                                                                                                         cTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctgcgctt  >  7:173086‑M1/1‑4 (MQ=255)                                                                                                                                         cTACagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctgcgctt  <  8:173086‑M1/148‑145 (MQ=255)                                                                                                                                            |                                                                                                                                                 GTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCG  >  NC_002947/478151‑478431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.