New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 478290	19 (0.360)	6 (0.150)	5/194	NT	34.8%	intergenic (+38/+72)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	= 478325	8 (0.200)					intergenic (+73/+37)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

AAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAC  >  NC_002947/478182‑478448                                                                                                                                                   |                                                                                                                            aaGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtag                                                                                                                         <  8:173086‑M2/148‑5 (MQ=255) aaGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtag                                                                                                                         >  7:173086‑M2/1‑144 (MQ=255)      cAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                                   >  3:205175‑M2/1‑139 (MQ=255)       aGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTGGAGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                                   >  1:238329‑M2/1‑139 (MQ=255)          tcgatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtt                                                                                                                >  1:105206‑M2/1‑135 (MQ=255)            gatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCGACG‑‑ACGGGCTG‑AGCCCCACCGCTGATGTGTGGCCCCTgtaggagcggggttac                                                                                                             <  3:203417‑M2/149‑17 (MQ=255)                  gTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                                   >  8:297851‑M2/1‑127 (MQ=255)                  gTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgg                                                                                                                   <  7:297851‑M2/137‑11 (MQ=255)                   tACTGGCCCCCGTGGCCTTTGTGGGGCGCTGGTTTCAGTTTCCGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACT‑‑ACGGGCTG‑AGCCAAACCTCTTATGTGTGCCCCCTgtaggagcgggtttacccgcgaa                                                                                                      >  4:203417‑M2/1‑126 (MQ=255)                        gCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGTCACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaaga                                                                                                    >  1:100293‑M2/1‑123 (MQ=255)                           cccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑CCGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                              >  5:156204/1‑149 (MQ=255)                                                      cAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTc                                                                    <  6:156204/148‑1 (MQ=255)                                                       aGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTc                                                                    >  5:280175/1‑147 (MQ=255)                                                                             tATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                            <  6:280175/149‑1 (MQ=255)                                                                                                   cccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatct                      <  6:47618‑M2/149‑104 (MQ=255)                                                                                                    ccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTg                                                                             <  2:159871/93‑1 (MQ=255)                                                                                                    ccGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTg                                                                             >  1:159871/1‑93 (MQ=255)                                                                                                     cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctgc                    >  5:47618‑M2/1‑44 (MQ=255)                                                                                                     cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctg                     <  6:128169‑M2/148‑105 (MQ=255)                                                                                                     cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcgggtttacccgcgaagaggccgatacaggctcaagcgggcgtcaactgcaacccgcgccactcaaaggccacgggggccagtacctgatcgatctg                     >  5:128169‑M2/1‑44 (MQ=255)                                                                                                     cGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTgtaggagcggctttacccgcgaagaggccgaaacaggctcaagcggccgtcaactgcaacccgcgccactcaaagcccacgggggccagtacctgatcgatctgc                    <  4:254863‑M2/149‑106 (MQ=255)                                                                                                                          tgcCCAACCTCTGTTGGGTGCCCCCTgtaggagcgggtttaccggcgaagagggcgatacaggctcaagcgggcgtcaactgcaacccgcggcactcaaaggcgaggggggcctgtacctgatcgatctgcgcttcctgccacagctgc  >  3:254863‑M2/2‑26 (MQ=255)                                                                                                                                    ctGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAg              <  6:255964/127‑1 (MQ=255)                                                                                                                                          tgtgCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                      <  1:163021/113‑1 (MQ=255)                                                                                                                                          tgtgCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                      >  2:163021/1‑113 (MQ=255)                                                                                                                                                cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTc                                                  >  2:55055/1‑79 (MQ=255)                                                                                                                                                cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTc                                                  <  1:55055/79‑1 (MQ=255)                                                                                                                                                   |                                                                                                                            AAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑ACGGGCTG‑AGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAC  >  NC_002947/478182‑478448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.