New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 710293	49 (0.930)	3 (0.060)	3/244	NT	5.9%	coding (91/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	= 710321	49 (0.970)					coding (119/2832 nt)	ileS	isoleucine‑‑tRNA ligase

CGCCGCCGCACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTC  >  NC_002947/710152‑710439                                                                                                                                              |                                                                                                                                                   cgccgccgcACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGa                                                                                                                                             >  4:2476/1‑149 (MQ=255)  gccgccgcACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGa                                                                                                                                             >  4:80550/1‑148 (MQ=255)        gcACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCAtt                                                                                                                                      <  2:306262/149‑1 (MQ=255)         cACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTg                                                                                                                                     <  3:80550/149‑1 (MQ=255)         cACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTg                                                                                                                                     <  5:270954/149‑1 (MQ=255)               cacaTTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTg                                                                                                                                <  4:334018/148‑1 (MQ=255)                acaTTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTa                                                                                                                              >  5:343750/1‑149 (MQ=255)                 caTTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTAc                                                                                                                             <  1:160626/149‑1 (MQ=255)                                ccGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCttctggtacaggccaatgctgtcccagcgctgcaggat                                                                                                              <  2:96992‑M1/149‑39 (MQ=255)                                   cTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAAtt                                                                                                           >  5:219844/1‑149 (MQ=255)                                      aCGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTgg                                                                                                         <  6:219844/148‑1 (MQ=255)                                               cTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCttctggtacaggccaatgctgtcccagcgctgca                                                                                                                  <  1:152190‑M1/130‑35 (MQ=255)                                               cTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCttctggtacaggccaatgctgtcccagcgctgca                                                                                                                  >  2:152190‑M1/1‑96 (MQ=255)                                                  aaaTGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTc                                                                                              <  3:2476/147‑1 (MQ=255)                                                                aaaGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                   <  2:79403/144‑1 (MQ=255)                                                                aaaGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                   >  1:79403/1‑144 (MQ=255)                                                                        gCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACa                                                                                                                                           <  8:77438/80‑1 (MQ=255)                                                                        gCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACa                                                                                                                                           >  7:77438/1‑80 (MQ=255)                                                                                ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCaa                                                                                                      >  4:195035/1‑109 (MQ=255)                                                                                ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCg                                                                                     <  2:320582/126‑1 (MQ=255)                                                                                ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCg                                                                                     >  1:320582/1‑126 (MQ=255)                                                                                ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                   >  1:66408/1‑128 (MQ=255)                                                                                ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                   <  2:66408/128‑1 (MQ=255)                                                                                 tCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATg                                                             >  1:325451/1‑149 (MQ=255)                                                                                          cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGc                                                     >  3:206569/1‑148 (MQ=255)                                                                                          cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGc                                                     >  7:143738/1‑148 (MQ=255)                                                                                          cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCa                                                    <  2:325451/149‑1 (MQ=255)                                                                                             cTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGa                                                 <  4:206569/149‑1 (MQ=255)                                                                                                ccccATGAAGGCTGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGgcccgccc                                                                 >  5:209520/1‑130 (MQ=255)                                                                                                ccccATGAAGGCTGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGgcccgccc                                                                 <  6:209520/130‑1 (MQ=255)                                                                                                ccccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGt                                                                                               <  3:252838/100‑1 (MQ=255)                                                                                                ccccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGt                                                                                               >  4:252838/1‑100 (MQ=255)                                                                                                 cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                   <  4:221429/111‑1 (MQ=255)                                                                                                 cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCaa                                                         >  4:12557/1‑137 (MQ=255)                                                                                                 cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCaa                                                         <  3:12557/137‑1 (MQ=255)                                                                                                 cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTca                                             <  8:143738/149‑1 (MQ=255)                                                                                                  ccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTca                                             >  5:139589/1‑148 (MQ=255)                                                                                                   cATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTcaca                                           >  6:309227/1‑149 (MQ=255)                                                                                                       aaGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCg                                        <  6:139589/148‑1 (MQ=255)                                                                                                        aGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGt                                      >  8:275589/1‑149 (MQ=255)                                                                                                                ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTc                                              <  5:282910/133‑1 (MQ=255)                                                                                                                ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTc                                              >  6:282910/1‑133 (MQ=255)                                                                                                                ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACAGCAAGATTCACATCGGTCATGCGCt                              >  3:136284/1‑149 (MQ=255)                                                                                                                     tCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATgcgc                               <  2:179569/143‑1 (MQ=255)                                                                                                                     tCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATgcgc                               >  1:179569/1‑143 (MQ=255)                                                                                                                       aGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCTACGGCAAGATTCACATCGGTCATGCGCTGAACa                         <  5:309227/147‑1 (MQ=255)                                                                                                                        gcgcGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAAc                          >  5:323554/1‑145 (MQ=255)                                                                                                                        gcgcGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGa                      <  7:275589/149‑1 (MQ=255)                                                                                                                          gcgAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTAGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATc                    >  7:12955/1‑149 (MQ=255)                                                                                                                               ccGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTc                 >  5:150375/1‑147 (MQ=255)                                                                                                                               ccGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCaa               <  6:343750/149‑1 (MQ=255)                                                                                                                                     aTCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcaggctcttcgttagcgg         <  2:96992‑M2/149‑112 (MQ=255)                                                                                                                                         tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcag                        <  1:152190‑M2/130‑97 (MQ=255)                                                                                                                                         tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcag                        >  2:152190‑M2/1‑34 (MQ=255)                                                                                                                                         tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCGCGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATc     >  8:118078/1‑149 (MQ=255)                                                                                                                                            aGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTc  >  2:157354/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   CGCCGCCGCACGTGCACATTGGCACGCTCAACCGCTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTC  >  NC_002947/710152‑710439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.