New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 710293	49 (0.930)	3 (0.060)	3/244	NT	5.9%	coding (91/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	= 710321	49 (0.970)					coding (119/2832 nt)	ileS	isoleucine‑‑tRNA ligase

CTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTC  >  NC_002947/710186‑710463                                                                                                                                        |                                                                                                                                               cTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAAtt                                                                                                                                   >  5:219844/1‑149 (MQ=255)    aCGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTgg                                                                                                                                 <  6:219844/148‑1 (MQ=255)                aaaTGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTc                                                                                                                      <  3:2476/147‑1 (MQ=255)                              aaaGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                                           <  2:79403/144‑1 (MQ=255)                              aaaGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                                           >  1:79403/1‑144 (MQ=255)                                              ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCaa                                                                                                                              >  4:195035/1‑109 (MQ=255)                                              ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCg                                                                                                             <  2:320582/126‑1 (MQ=255)                                              ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCg                                                                                                             >  1:320582/1‑126 (MQ=255)                                              ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                                           >  1:66408/1‑128 (MQ=255)                                              ttCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                                           <  2:66408/128‑1 (MQ=255)                                               tCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATg                                                                                     >  1:325451/1‑149 (MQ=255)                                                        cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGc                                                                             >  3:206569/1‑148 (MQ=255)                                                        cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGc                                                                             >  7:143738/1‑148 (MQ=255)                                                        cGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCa                                                                            <  2:325451/149‑1 (MQ=255)                                                           cTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGa                                                                         <  4:206569/149‑1 (MQ=255)                                                              ccccATGAAGGCTGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGgcccgccc                                                                                         <  6:209520/130‑1 (MQ=255)                                                              ccccATGAAGGCTGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGgcccgccc                                                                                         >  5:209520/1‑130 (MQ=255)                                                              ccccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGt                                                                                                                       >  4:252838/1‑100 (MQ=255)                                                              ccccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGt                                                                                                                       <  3:252838/100‑1 (MQ=255)                                                               cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTc                                                                                                           <  4:221429/111‑1 (MQ=255)                                                               cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCaa                                                                                 >  4:12557/1‑137 (MQ=255)                                                               cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCaa                                                                                 <  3:12557/137‑1 (MQ=255)                                                               cccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTca                                                                     <  8:143738/149‑1 (MQ=255)                                                                ccATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTca                                                                     >  5:139589/1‑148 (MQ=255)                                                                 cATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTcaca                                                                   >  6:309227/1‑149 (MQ=255)                                                                     aaGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCg                                                                <  6:139589/148‑1 (MQ=255)                                                                      aGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGt                                                              >  8:275589/1‑149 (MQ=255)                                                                              ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTc                                                                      <  5:282910/133‑1 (MQ=255)                                                                              ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTc                                                                      >  6:282910/1‑133 (MQ=255)                                                                              ctgcctCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACAGCAAGATTCACATCGGTCATGCGCt                                                      >  3:136284/1‑149 (MQ=255)                                                                                   tCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATgcgc                                                       >  1:179569/1‑143 (MQ=255)                                                                                   tCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATgcgc                                                       <  2:179569/143‑1 (MQ=255)                                                                                     aGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCTACGGCAAGATTCACATCGGTCATGCGCTGAACa                                                 <  5:309227/147‑1 (MQ=255)                                                                                      gcgcGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAAc                                                  >  5:323554/1‑145 (MQ=255)                                                                                      gcgcGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGa                                              <  7:275589/149‑1 (MQ=255)                                                                                        gcgAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTAGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATc                                            >  7:12955/1‑149 (MQ=255)                                                                                             ccGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTc                                         >  5:150375/1‑147 (MQ=255)                                                                                             ccGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCaa                                       <  6:343750/149‑1 (MQ=255)                                                                                                   aTCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcaggctcttcgttagcgg                                 <  2:96992‑M2/149‑112 (MQ=255)                                                                                                       tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcag                                                <  1:152190‑M2/130‑97 (MQ=255)                                                                                                       tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAgctgcaggatctgcggttcgcgctgaggcaggccggccttcatggggaaggcggtgtccggaaggttaagcgtggctttgtagtcggtcatttcag                                                >  2:152190‑M2/1‑34 (MQ=255)                                                                                                       tGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCGCGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATc                             >  8:118078/1‑149 (MQ=255)                                                                                                          aGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTc                          >  2:157354/1‑149 (MQ=255)                                                                                                              cTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGtt                      <  6:323554/149‑1 (MQ=255)                                                                                                                 ggACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACAGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCa                   <  4:136284/149‑1 (MQ=255)                                                                                                                    cAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTc                                                                      >  6:35214/1‑95 (MQ=255)                                                                                                                        aTTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCt            >  2:194311/1‑149 (MQ=255)                                                                                                                              cTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCgg      >  1:190056/1‑149 (MQ=255)                                                                                                                                gTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGAc                                   <  4:82146/118‑1 (MQ=255)                                                                                                                                gTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGAc                                   >  3:82146/1‑118 (MQ=255)                                                                                                                                   ccAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTc  >  2:275505/1‑148 (MQ=255)                                                                                                                                   ccAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGAACGTCCGTTCCAAGACCCTGGCCGGCTTc  <  1:194311/148‑1 (MQ=255)                                                                                                                                        |                                                                                                                                               CTAACGAAGAGCCTGAAATGACCGACTACAAAGCCACGCTTAACCTTCCGGACACCGCCTTCCCCATGAAGGCCGGCCTGCCTCAGCGCGAACCGCAGATCCTGCAGCGCTGGGACAGCATTGGCCTGTACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTC  >  NC_002947/710186‑710463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.