New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	773996 =	41 (0.780)	4 (0.080)	3/242	NT	9.2%	coding (603/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	774036 =	40 (0.800)					coding (643/1419 nt)	PP_0665	glyceraldehyde‑3‑phosphate dehydrogenase

GCTCAACCTGGTGGCGCACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTGGCGGCAA  >  NC_002947/773849‑774139                                                                                                                                                    |                                                                                                                                                gCTCAACCTGGTGGCGCACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAg                                                                                                                                                >  5:197661/1‑149 (MQ=255)   tggcttccaggtcgcagtccttgagcaccagcaccggggcgttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcacAGc                                                                                                                                               <  1:140081‑M1/3‑1 (MQ=255)      aCCTGGTGGCGCACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCca                                                                                                                                             >  4:181997/1‑147 (MQ=255)        cTGGTGGCGCACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAgg                                                                                                                                         >  7:205441/1‑149 (MQ=255)               cgcACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGcc                                                                                                                                  <  8:207462/149‑1 (MQ=255)                  acaAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGaa                                                                                                                               >  6:224988/1‑149 (MQ=255)                      gCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTgg                                                                                                                           <  4:227181/149‑1 (MQ=255)                      gCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTgg                                                                                                                           <  1:91520/149‑1 (MQ=255)                      gCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTgg                                                                                                                           >  2:91520/1‑149 (MQ=255)                               cagcaccggggcgttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcaca                                                                                                                                                 >  1:202271‑M1/118‑118 (MQ=255)                               cagcaccggggcgttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcaca                                                                                                                                                 <  2:202271‑M1/1‑1 (MQ=255)                                 cACGTGCAGGGGGCAATGCGGTCATTCGGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCGGAAACTGGGTCAGTTCCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGGCACCGTAGCCACACGGGGCGCCGAACTGGGCAAGGCGCtg                                                                                                                <  3:77395/149‑1 (MQ=255)                                    ttGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCtggtg                                                                                                             >  7:237183/1‑149 (MQ=255)                                          ggggCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCtgt                                                                                                        <  5:274273/148‑1 (MQ=255)                                          ggggCAAAGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCACTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCTTCACCGAAGCCACAGGGGGCCCCGAACTGGGGAAGGCGCTGGTGGCtgt                                                                                                        >  6:274273/1‑148 (MQ=255)                                            ttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcacAGCCACAGGGGGCGCTGAACTGGGCAAGGCGCTGGTGGCTGTGCg                                                                                                     <  8:197333‑M1/45‑1 (MQ=255)                                            ttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcacAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGc                                                                                                      <  2:272403‑M1/44‑1 (MQ=255)                                            ttgccgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcacAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGc                                                                                                      >  1:272403‑M1/105‑148 (MQ=255)                                               aaTGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGa                                                                                                  <  5:224988/149‑1 (MQ=255)                                                cgccaaggtccatggcaagctttttcaaaccagccccgtgcgcaatcttttcgcccgtcgcgaaaccgcccgtaaaggaaaccatgcgcacctcacgcacAGCCACAGGGGGCGCTGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAg                                                                                                 >  7:197333‑M1/101‑149 (MQ=255)                                                            tGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCtggtgg                                                                                                            <  3:137204/126‑1 (MQ=255)                                                            tGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCtggtgg                                                                                                            >  4:137204/1‑126 (MQ=255)                                                             gAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCCGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGACaa                                                                                                                       >  6:71778/1‑114 (MQ=255)                                                               aaCCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTc                                                                                   <  3:181997/148‑1 (MQ=255)                                                                  ccTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCtt                                                                                >  2:176346/1‑148 (MQ=255)                                                                      ggAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTAc                                                                             <  6:197661/147‑1 (MQ=255)                                                                      ggAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACg                                                                            <  8:237183/148‑1 (MQ=255)                                                                              ccccGCTTTCTGCCCTGAAACTGGGGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTc                                                                   <  1:176346/149‑1 (MQ=255)                                                                                           ccTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCg                                                                        >  5:18463/1‑131 (MQ=255)                                                                                           ccTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCg                                                                        <  6:18463/131‑1 (MQ=255)                                                                                               aaaCTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGAt                                                  >  8:104120/1‑149 (MQ=255)                                                                                                aaCTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGAtt                                                 >  5:121034/1‑149 (MQ=255)                                                                                                    ggTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTgcg                                              >  4:109394/1‑148 (MQ=255)                                                                                                     gTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCa                                            >  5:9491/1‑149 (MQ=255)                                                                                                      tGCAGTACCTGGTGGATGCAGGGATGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCAc                                           >  4:244458/1‑149 (MQ=255)                                                                                                             ccTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTg                                    <  7:104120/149‑1 (MQ=255)                                                                                                                 gtggATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGttt                                >  1:188858/1‑149 (MQ=255)                                                                                                                 gtggATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGtt                                 <  3:109394/148‑1 (MQ=255)                                                                                                                   ggATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTg                               >  2:338974/1‑148 (MQ=255)                                                                                                                    gATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGa                              <  6:121034/148‑1 (MQ=255)                                                                                                                      tGCAGGGATGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGaaaa                           <  3:244458/149‑1 (MQ=255)                                                                                                                           ggCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCtt                      >  4:91914/1‑149 (MQ=255)                                                                                                                           ggCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCtt                      <  1:338974/149‑1 (MQ=255)                                                                                                                                   gAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGa              <  3:91914/149‑1 (MQ=255)                                                                                                                                   gAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGa              >  5:172202/1‑149 (MQ=255)                                                                                                                                        cgtcgtCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAg                         <  2:34406/133‑1 (MQ=255)                                                                                                                                        cgtcgtCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAg                         >  1:34406/1‑133 (MQ=255)                                                                                                                                         gtcgtcACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTgg        >  2:117250/1‑149 (MQ=255)                                                                                                                                          tcgtcACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTggc       >  7:215755/1‑149 (MQ=255)                                                                                                                                            gtcACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTggcgg     >  8:111007/1‑149 (MQ=255)                                                                                                                                               aCCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTGGCGGCaa  >  3:172866/1‑149 (MQ=255)                                                                                                                                                  gTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGc                        >  7:163340/1‑124 (MQ=255)                                                                                                                                                  gTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGc                        <  8:163340/124‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                GCTCAACCTGGTGGCGCACAAGCTGGGGCCAGCACTTGCAGGGGGCAATGCGGTCATTCTGAAACCCTCGGAACTGGCCCCGCTTTCTGCCCTGAAACTGGTGCAGTACCTGGTGGATGCAGGGCTGCCGGAGGCCGTCGTCACCGTAGCCACAGGGGGCGCCGAACTGGGCAAGGCGCTGGTGGCTGTGCGTGAGGTGCGCATGGTTTCCTTTACGGGCGGTTTCGCGACGGGCGAAAAGATTGCGCACGGGGCTGGTTTGAAAAAGCTTGCCATGGACCTTGGCGGCAA  >  NC_002947/773849‑774139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.