New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 809229 = | 57 (1.080) | 4 (0.080) | 4/242 | NT | 7.6% | coding (129/1335 nt) | PP_0695 | hypothetical protein |
? | NC_002947 | 809268 = | 43 (0.850) | coding (90/1335 nt) | PP_0695 | hypothetical protein |
AACGGTTCGGGCTCTTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTT > NC_002947/809093‑809372 | aaCGGTTCGGGCTCTTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGaaa > 8:125990/1‑149 (MQ=255) gTTCGGGCTCTTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCt < 7:125990/149‑1 (MQ=255) ctctTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAg > 3:183531/1‑149 (MQ=255) tctTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGc > 2:81481/1‑149 (MQ=255) ggCCACCGGGACCAGGATTTCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGc < 2:174235/148‑1 (MQ=255) gCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTc < 1:22364/149‑1 (MQ=255) gCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTc > 5:339103/1‑149 (MQ=255) cACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGa > 7:304976/1‑149 (MQ=255) ccGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGTGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTGGATc < 5:247797/149‑1 (MQ=255) caaggggtaaaaaccacccccgcgaatgcagtacaatcgccccctttttcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactggGCCCTGGTCGAAACGCTCGCACAGCGGCTCGAt < 6:117338‑M1/33‑1 (MQ=255) cGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCa < 6:339103/149‑1 (MQ=255) ggACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAgg < 8:304976/149‑1 (MQ=255) gACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAggg < 1:81481/149‑1 (MQ=255) aGGATATCCAGGCGGATCCACACGACGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCa > 7:48735/1‑149 (MQ=255) ggATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGt > 3:245166/1‑114 (MQ=255) ggATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGt < 4:245166/114‑1 (MQ=255) ggATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAg < 5:322406/149‑1 (MQ=255) tCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc < 5:298498/149‑1 (MQ=255) gcagtacaatcgccccctttttcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactggGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCgg > 8:308899‑M1/89‑138 (MQ=255) gcagtacaatcgccccctttttcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactggGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCgg < 7:308899‑M1/50‑1 (MQ=255) acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGc > 6:218717/1‑108 (MQ=255) acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGgcgcg > 6:32456/1‑148 (MQ=255) acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGgcgcg > 6:219358/1‑148 (MQ=255) acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCA‑GGCCCAGTGtt < 7:106775/134‑1 (MQ=255) acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCA‑GGCCCAGTGtt > 8:106775/1‑134 (MQ=255) tCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTGGATCAgg > 5:97150/1‑102 (MQ=255) tCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAgg < 6:97150/102‑1 (MQ=255) tCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAgg < 6:102186/102‑1 (MQ=255) tCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTAGATCAgg > 5:102186/1‑102 (MQ=255) cTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt < 5:219358/148‑1 (MQ=255) cTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTg > 7:184767/1‑149 (MQ=255) ggggTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCtt < 5:32456/149‑1 (MQ=255) gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCg > 6:330912/1‑133 (MQ=255) gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCg < 5:330912/133‑1 (MQ=255) gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACt > 1:22268/1‑149 (MQ=255) tttCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc > 6:291125/1‑100 (MQ=255) tttCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc < 5:291125/100‑1 (MQ=255) tCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCtt > 8:160242/1‑122 (MQ=255) tCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCtt < 7:160242/122‑1 (MQ=255) ctgctgGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCaa < 8:48735/149‑1 (MQ=255) ggCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt > 2:21942/1‑125 (MQ=255) ggCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt < 1:21942/125‑1 (MQ=255) ccACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg < 2:22268/149‑1 (MQ=255) ccACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCAAAGAAAAAggggg > 8:267191/1‑149 (MQ=255) gCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg > 5:154133/1‑149 (MQ=255) tGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTa > 6:198116/1‑149 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGAtt > 7:170021/1‑144 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGAtt < 8:170021/144‑1 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg > 7:115368/1‑145 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg < 8:115368/145‑1 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTAc < 5:198116/148‑1 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt > 7:111311/1‑149 (MQ=255) gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt < 4:183531/149‑1 (MQ=255) cAGTTCGACCAGGCTCAGGGTGCCCGGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGGGTTCGGCTAGGGCGCGCAGGACGCGCGTGGGTTCGATCATTGGCTTCGCCTCGTTGCCAAGAAAAAGGGGGCGAGTGTACTGCa > 3:190646/1‑149 (MQ=255) ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg < 4:225682/133‑1 (MQ=255) ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg > 3:225682/1‑133 (MQ=255) ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt < 5:343875/143‑1 (MQ=255) ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt > 6:343875/1‑143 (MQ=255) ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTc > 1:172875/1‑149 (MQ=255) cctagccgaacactggGCCCTGATCGAGCCGCTGTGCGAGCGTTTCGACCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAATAAGGGGGCGATTGTACTGCATTcgc < 5:117338‑M1/133‑1 (MQ=255) aCCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCgg > 5:195333/1‑149 (MQ=255) aGGGTGCCCTGTGCGAAACGCTCGCACAGCGGCTCGAGCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTGGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGttt < 4:190646/149‑1 (MQ=255) | AACGGTTCGGGCTCTTGGCCACCGGGACCAGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTT > NC_002947/809093‑809372 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |