New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 809229 =57 (1.080)4 (0.080) 4/242 NT 7.6% coding (129/1335 nt) PP_0695 hypothetical protein
?NC_002947 809268 = 43 (0.850)coding (90/1335 nt) PP_0695 hypothetical protein

AGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATAACCATGGGAT  >  NC_002947/809122‑809409
                                                                                                                                                  |                                                                                                                                             
aGGATATCCAGGCGGATCCACACGACGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCa                                                                                                                                             >  7:48735/1‑149 (MQ=255)
 ggATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAg                                                                                                                                            <  5:322406/149‑1 (MQ=255)
      tCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc                                                                                                                                       <  5:298498/149‑1 (MQ=255)
             gcgaatgcagtacaatcgcccccttattcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactgggccctggtcgaaacgctcgcacagcggctcgatcagggcCCAGTGTTCGGCTAgg                                                                                                                                <  5:117338‑M2/16‑1 (MQ=255)
                   gcagtacaatcgccccctttttcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactggGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCgg                                                                                                                                     >  8:308899‑M1/89‑138 (MQ=255)
                   gcagtacaatcgccccctttttcttggcaacgagtcgaagccaatgatcgaacccaagcgcgtcctgcgcgccctagccgaacactggGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCgg                                                                                                                                     <  7:308899‑M1/50‑1 (MQ=255)
                   acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGgcgcg                                                                                                                           >  6:32456/1‑148 (MQ=255)
                   acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGgcgcg                                                                                                                           >  6:219358/1‑148 (MQ=255)
                   acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGCCCAGTGtt                                                                                                                                        <  7:106775/134‑1 (MQ=255)
                   acacGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGCCCAGTGtt                                                                                                                                        >  8:106775/1‑134 (MQ=255)
                                            cTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt                                                                                                  <  5:219358/148‑1 (MQ=255)
                                            cTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTg                                                                                                 >  7:184767/1‑149 (MQ=255)
                                                ggggTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCtt                                                                                             <  5:32456/149‑1 (MQ=255)
                                                     gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCg                                                                                                        >  6:330912/1‑133 (MQ=255)
                                                     gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCg                                                                                                        <  5:330912/133‑1 (MQ=255)
                                                     gCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACt                                                                                        >  1:22268/1‑149 (MQ=255)
                                                       tttCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc                                                                                                                                       >  6:291125/1‑100 (MQ=255)
                                                       tttCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTc                                                                                                                                       <  5:291125/100‑1 (MQ=255)
                                                         tCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCtt                                                                                                               >  8:160242/1‑122 (MQ=255)
                                                         tCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCtt                                                                                                               <  7:160242/122‑1 (MQ=255)
                                                              ctgctgGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCaa                                                                               <  8:48735/149‑1 (MQ=255)
                                                                   ggCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt                                                                                                  <  1:21942/125‑1 (MQ=255)
                                                                   ggCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCAtt                                                                                                  >  2:21942/1‑125 (MQ=255)
                                                                         ccACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg                                                                    <  2:22268/149‑1 (MQ=255)
                                                                         ccACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCAAAGAAAAAggggg                                                                    >  8:267191/1‑149 (MQ=255)
                                                                               gCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg                                                              >  5:154133/1‑149 (MQ=255)
                                                                                 tGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTa                                                            >  6:198116/1‑149 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGAtt                                                               >  7:170021/1‑144 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGAtt                                                               <  8:170021/144‑1 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg                                                              >  7:115368/1‑145 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTg                                                              <  8:115368/145‑1 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTAc                                                           <  5:198116/148‑1 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt                                                          >  7:111311/1‑149 (MQ=255)
                                                                                   gcgcAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt                                                          <  4:183531/149‑1 (MQ=255)
                                                                                      cAGTTCGACCAGGCTCAGGGTGCCCGGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGGGTTCGGCTAGGGCGCGCAGGACGCGCGTGGGTTCGATCATTGGCTTCGCCTCGTTGCCAAGAAAAAGGGGGCGAGTGTACTGCa                                                       >  3:190646/1‑149 (MQ=255)
                                                                                         ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg                                                                    >  3:225682/1‑133 (MQ=255)
                                                                                         ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAggggg                                                                    <  4:225682/133‑1 (MQ=255)
                                                                                         ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt                                                          <  5:343875/143‑1 (MQ=255)
                                                                                         ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACt                                                          >  6:343875/1‑143 (MQ=255)
                                                                                         ttCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTc                                                    >  1:172875/1‑149 (MQ=255)
                                                                                           cctagccgaacactggGCCCTGATCGAGCCGCTGTGCGAGCGTTTCGACCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAATAAGGGGGCGATTGTACTGCATTcgc                                                  <  5:117338‑M1/133‑1 (MQ=255)
                                                                                             aCCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCgg                                                >  5:195333/1‑149 (MQ=255)
                                                                                                ccgaacactgggccctgatcgagccgctgtgcgagcgtttcgaccagggcCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGc                                                        >  8:308899‑M2/51‑138 (MQ=255)
                                                                                                ccgaacactgggccctgatcgagccgctgtgcgagcgtttcgaccagggcCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGc                                                        <  7:308899‑M2/88‑1 (MQ=255)
                                                                                                      aGGGTGCCCTGTGCGAAACGCTCGCACAGCGGCTCGAGCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTGGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGttt                                       <  4:190646/149‑1 (MQ=255)
                                                                                                           agCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTAc                                   >  8:168159‑M1/3‑148 (MQ=255)
                                                                                                            CCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAgg                                                                       >  1:259470‑M1/1‑111 (MQ=255)
                                                                                                            CCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAgg                                                                       <  2:259470‑M1/111‑1 (MQ=255)
                                                                                                                 atcgagccgctgtgcgagcgtttcgaccagggcCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTg                             <  6:117338‑M2/115‑1 (MQ=255)
                                                                                                                       aCGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTgg                                                                                                             >  3:61409/1‑62 (MQ=255)
                                                                                                                       aCGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTgg                                                                                                             <  4:61409/62‑1 (MQ=255)
                                                                                                                             gCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATga                  <  6:195333/147‑1 (MQ=255)
                                                                                                                              cacaGCGGCTCGATGAGGGCCCAGTGTTCGGGTAGGGCGCGCTGGACGCGCTTGGGTTCTATCATTGGCTTCGACTCGTTGCCAATAAAAAGGGGGCTATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGaa               <  6:154133/149‑1 (MQ=255)
                                                                                                                                 aGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAAt             >  6:273258/1‑148 (MQ=255)
                                                                                                                                  gCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATaa           >  6:85655/1‑149 (MQ=255)
                                                                                                                                         gATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATAACCATggg    <  5:273258/149‑1 (MQ=255)
                                                                                                                                          aTCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGaa               >  7:289279/1‑137 (MQ=255)
                                                                                                                                          aTCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATAACCATGGGa   >  1:167337/1‑149 (MQ=255)
                                                                                                                                           tCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATAACCATGGGAt  <  5:85655/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                             
AGGATATCCAGGCGGATCCACACGTCGAGTAGCTGGGTGATGTCCTGCGGGGTGCTTTCGAGCTGCTGGCGGGCCACATGCTGGCGCAGTTCGACCAGGCTCAGGGTGCCCTGGTCGAAACGCTCGCACAGCGGCTCGATCAGGGCCCAGTGTTCGGCTAGGGCGCGCAGGACGCGCTTGGGTTCGATCATTGGCTTCGACTCGTTGCCAAGAAAAAGGGGGCGATTGTACTGCATTCGCGGGGGTGGTTTTTACCCCTTGGTCTGTAATGAGAAATAACCATGGGAT  >  NC_002947/809122‑809409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.