New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	814536 =	42 (0.800)	3 (0.060)	3/242	NT	7.1%	coding (24/1215 nt)	fsr‑I	fosmidomycin efflux system
	?	NC_002947	814584 =	39 (0.780)					coding (72/1215 nt)	fsr‑I	fosmidomycin efflux system

AGAACCATTTTCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAG  >  NC_002947/814407‑814682                                                                                                                                  |                                                                                                                                                    agaACCATTTTCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCg                                                                                                                                  <  1:312625/148‑1 (MQ=255)      cATTTTCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGcaagc                                                                                                                            >  7:125930/1‑149 (MQ=255)        ttttCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGcaagcc                                                                                                                           >  3:254546/1‑148 (MQ=255)        ttttCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGc                                                                                                                                <  1:327635/143‑1 (MQ=255)        ttttCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGc                                                                                                                                >  2:327635/1‑143 (MQ=255)               gTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCg                                                                                                                   >  6:223510/1‑149 (MQ=255)                 aCGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGc                                                                                                                  <  8:174701/148‑1 (MQ=255)                          cAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGAt                                                                                                        <  4:254546/149‑1 (MQ=255)                            agctcaggtcgtagttggccttgagcatcgggtagatcgcgggcagcaccgattggatcaggtcgttgatcaagtgcgccaagggtgcagaaaccgatgataCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGc                                                                                                      >  1:278105‑M1/103‑149 (MQ=255)                                 aTAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                  >  3:271981/1‑148 (MQ=255)                                  tAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatc                                                                                                 <  8:125930/148‑1 (MQ=255)                                   aaaaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcat                                                                                               >  6:181075/1‑149 (MQ=255)                                    aaaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTaccatc                                                                                              >  4:239213/1‑149 (MQ=255)                                     aaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCg                                                                                             <  5:223510/149‑1 (MQ=255)                                             gCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTgc                                                                                     <  4:224129/149‑1 (MQ=255)                                             gCTATGTAACTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATAGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTg                                                                                      <  3:59903/148‑1 (MQ=255)                                               ccttgagcatcgggtagatcgcgggcagcaccgattggatcaggtcgttgatcaagtgcgccaaggcgcagaaaccgatgataCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcatc                                                                                              <  8:238457‑M1/55‑1 (MQ=255)                                               ccttgagcatcgggtagatcgcgggcagcaccgattggatcaggtcgttgatcaagtgcgccaaggcgcagaaaccgatgataCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcatc                                                                                              >  7:238457‑M1/84‑138 (MQ=255)                                                     tCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCg                                                                                                                   <  3:347710/111‑1 (MQ=255)                                                     tCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCg                                                                                                                   >  4:347710/1‑111 (MQ=255)                                                         tttGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCAc                                                                         >  3:70648/1‑149 (MQ=255)                                                             aTTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTACCATCGGTTTCTGCGCCTTGGCGCACTTg                                                                      <  3:239213/148‑1 (MQ=255)                                                                 cTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCCCTTGATCaa                                                                 >  8:256933/1‑149 (MQ=255)                                                                 cTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCa                                                                  <  6:280823/148‑1 (MQ=255)                                                                  tGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATc                                                                   <  5:165333/146‑1 (MQ=255)                                                                  tGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATc                                                                   >  6:165333/1‑146 (MQ=255)                                                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATc                                                                   <  8:327217/145‑1 (MQ=255)                                                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATc                                                                   >  7:327217/1‑145 (MQ=255)                                                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAAc                                                                >  3:48456/1‑148 (MQ=255)                                                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                  >  1:185656/1‑101 (MQ=255)                                                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                  <  2:185656/101‑1 (MQ=255)                                                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGAc                                                             >  5:153780/1‑138 (MQ=255)                                                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGAc                                                             <  6:153780/138‑1 (MQ=255)                                                                                    ccAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACt                                                                        <  8:115592/123‑1 (MQ=255)                                                                                    ccAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGtg                                              <  4:70648/149‑1 (MQ=255)                                                                                       gagGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGtgctg                                           >  1:320363/1‑149 (MQ=255)                                                                                          gACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGccc                                        <  4:271981/149‑1 (MQ=255)                                                                                                 aTTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATc                                  >  2:303398/1‑148 (MQ=255)                                                                                                      ggCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCTCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGAt                                                                                                        <  2:279113/73‑1 (MQ=255)                                                                                                      ggCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGAt                                                                                                        >  1:279113/1‑73 (MQ=255)                                                                                                       gCAAATGGCCACCAGTAGTGCCTCCACCGCATTCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGcc                                         >  1:36647/1‑136 (MQ=255)                                                                                                       gCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGcc                                         <  2:36647/135‑1 (MQ=255)                                                                                                            tGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTc                      <  2:320363/149‑1 (MQ=255)                                                                                                                 accaGTAGTGCATCCACAGCA‑TCCAACCCGGCAGCGGCAAGCCAAGCCACGCCCATGGTGATCCGTATAATCGCTTTCTGCGCCTTGGCGCACTTGAACAACGACCTGATCCAATCGGTGCTGCCCGCGCACTAACCTATGCTCaacga                 >  4:189847/1‑146 (MQ=255)                                                                                                                      tagtGCCTCCACCTCA‑TCCACCCCTGGAGCGGCAAGCCAAGCCTCGCCGATTGTTATGCGTATCATCGGTTTCTGCTCCTTTGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACt            <  3:189847/149‑1 (MQ=255)                                                                                                                             tCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCTGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCt     >  1:75923/1‑149 (MQ=255)                                                                                                                             tCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCt     >  5:160130/1‑149 (MQ=255)                                                                                                                               cACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCTGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGa   <  2:75923/149‑1 (MQ=255)                                                                                                                                aCCGCA‑TCCACCCCGGCAGCGGCAAGCCACGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAg  >  7:63583/1‑149 (MQ=255)                                                                                                                                  |                                                                                                                                                    AGAACCATTTTCAAGTACGTGGCGACAGGGGGATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGCGCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAG  >  NC_002947/814407‑814682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.