New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	814536 =	42 (0.800)	3 (0.060)	3/242	NT	7.1%	coding (24/1215 nt)	fsr‑I	fosmidomycin efflux system
	?	NC_002947	814584 =	39 (0.780)					coding (72/1215 nt)	fsr‑I	fosmidomycin efflux system

ATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGCATGATCACGCTCACGTTCCAG  >  NC_002947/814439‑814719                                                                                                                                                   |                                                                                                                                         aTAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                                                        >  3:271981/1‑148 (MQ=255)  tAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatc                                                                                                                                       <  8:125930/148‑1 (MQ=255)   aaaaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcat                                                                                                                                     >  6:181075/1‑149 (MQ=255)    aaaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTaccatc                                                                                                                                    >  4:239213/1‑149 (MQ=255)     aaaaGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCg                                                                                                                                   <  5:223510/149‑1 (MQ=255)             gCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTgc                                                                                                                           <  4:224129/149‑1 (MQ=255)             gCTATGTAACTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATAGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTg                                                                                                                            <  3:59903/148‑1 (MQ=255)               ccttgagcatcgggtagatcgcgggcagcaccgattggatcaggtcgttgatcaagtgcgccaaggcgcagaaaccgatgataCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcatc                                                                                                                                    <  8:238457‑M1/55‑1 (MQ=255)               ccttgagcatcgggtagatcgcgggcagcaccgattggatcaggtcgttgatcaagtgcgccaaggcgcagaaaccgatgataCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTatcatc                                                                                                                                    >  7:238457‑M1/84‑138 (MQ=255)                         tttGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCAc                                                                                                              >  3:70648/1‑149 (MQ=255)                             aTTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTACCATCGGTTTCTGC‑GCCTTGGCGCACTTg                                                                                                           <  3:239213/148‑1 (MQ=255)                                 cTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCCCTTGATCaa                                                                                                      >  8:256933/1‑149 (MQ=255)                                 cTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCa                                                                                                       <  6:280823/148‑1 (MQ=255)                                  tGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATc                                                                                                        <  5:165333/146‑1 (MQ=255)                                  tGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATc                                                                                                        >  6:165333/1‑146 (MQ=255)                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATc                                                                                                        <  8:327217/145‑1 (MQ=255)                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATc                                                                                                        >  7:327217/1‑145 (MQ=255)                                   gATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAAc                                                                                                     >  3:48456/1‑148 (MQ=255)                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                                                        >  1:185656/1‑101 (MQ=255)                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTat                                                                                                                                        <  2:185656/101‑1 (MQ=255)                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGAc                                                                                                  <  6:153780/138‑1 (MQ=255)                                                cAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGAc                                                                                                  >  5:153780/1‑138 (MQ=255)                                                    ccAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACt                                                                                                             <  8:115592/123‑1 (MQ=255)                                                    ccAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGtg                                                                                   <  4:70648/149‑1 (MQ=255)                                                       gagGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGtgctg                                                                                >  1:320363/1‑149 (MQ=255)                                                          gACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGccc                                                                             <  4:271981/149‑1 (MQ=255)                                                                 aTTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATc                                                                       >  2:303398/1‑148 (MQ=255)                                                                       gCAAATGGCCACCAGTAGTGCCTCCACCGCATTCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGcc                                                                              >  1:36647/1‑136 (MQ=255)                                                                       gCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGcc                                                                              <  2:36647/135‑1 (MQ=255)                                                                            tGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTc                                                           <  2:320363/149‑1 (MQ=255)                                                                                 accaGTAGTGCATCCACAGCA‑TCCAACCCGGCAGCGGCAAGCCAAGCCACGCCCATGGTGATCCGTATAATCGCTTTCTGC‑GCCTTGGCGCACTTGAACAACGACCTGATCCAATCGGTGCTGCCCGCGCACTAACCTATGCTCaacga                                                      >  4:189847/1‑146 (MQ=255)                                                                                      tagtGCCTCCACCTCA‑TCCACCCCTGGAGCGGCAAGCCAAGCCTCGCCGATTGTTATGCGTATCATCGGTTTCTGC‑TCCTTTGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACt                                                 <  3:189847/149‑1 (MQ=255)                                                                                            gatgatacgcatcaccatcggcgaggcttggcttgccgctgccggggtggatgcgTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAgg                                                       <  8:238457‑M2/83‑1 (MQ=255)                                                                                            gatgatacgcatcaccatcggcgaggcttggcttgccgctgccggggtggatgcgTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAgg                                                       >  7:238457‑M2/56‑138 (MQ=255)                                                                                             tCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCTGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCt                                          >  1:75923/1‑149 (MQ=255)                                                                                             tCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCt                                          >  5:160130/1‑149 (MQ=255)                                                                                               cACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCTGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGa                                        <  2:75923/149‑1 (MQ=255)                                                                                                aCCGCA‑TCCACCCCGGCAGCGGCAAGCCACGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAg                                       >  7:63583/1‑149 (MQ=255)                                                                                                    gcatcaccatcggcgaggcttggcttgccgctgccggggtggatgcgTATCATCGGTTTCTGCACCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCt                                     >  1:278105‑M2/48‑149 (MQ=255)                                                                                                         ctccccGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTTATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGccc                               <  3:263400/147‑1 (MQ=255)                                                                                                            cccGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTg                                         >  7:325415/1‑136 (MQ=255)                                                                                                            cccGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTg                                         <  8:325415/136‑1 (MQ=255)                                                                                                              cGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATc                          <  6:160130/149‑1 (MQ=255)                                                                                                                 cAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGc                       <  1:303398/149‑1 (MQ=255)                                                                                                                      gCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGCATGAt                  >  7:80194/1‑149 (MQ=255)                                                                                                                             aagccTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGccc                                                                             <  2:256648/83‑1 (MQ=255)                                                                                                                                    gCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGCATGATCACGCTCACGTTc     <  8:63583/148‑1 (MQ=255)                                                                                                                                      cGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGCATGATCACGCTCACGTTCCAg  <  4:48456/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                         ATAAAAAAGGTAGCTATGTATCTATTTGATTCCTGATAATCGGATCCCAAACCAGAGGACGGAGATTCAGGCAAATGGCCACCAGTAGTGCCTCCACCGCA‑TCCACCCCGGCAGCGGCAAGCCAAGCCTCGCCGATGGTGATGCGTATCATCGGTTTCTGC‑GCCTTGGCGCACTTGATCAACGACCTGATCCAATCGGTGCTGCCCGCGATCTACCCGATGCTCAAGGCCAACTACGACCTGAGCTTCGCCCAGATCGGCATGATCACGCTCACGTTCCAG  >  NC_002947/814439‑814719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.