New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	867935 =	40 (0.760)	4 (0.090)	4/224	NT	11.9%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867995 =	24 (0.520)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

GCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAG  >  NC_002947/867789‑868083                                                                                                                                                   |                                                                                                                                                        ccgataacgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGc                                                                                                                                                        >  4:272255‑M1/147‑148 (MQ=255)       acgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTcc                                                                                                                                                 >  2:233327‑M1/141‑149 (MQ=255)       acgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTc                                                                                                                                                  >  3:90447‑M1/141‑148 (MQ=255)         gacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaacgccctcttcgcgggcatGCCCGCTCCca                                                                                                                                               <  7:209756‑M1/11‑1 (MQ=255)          gacctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCca                                                                                                                                               <  8:238597/148‑1 (MQ=255)            cctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAg                                                                                                                                            <  8:146314/149‑1 (MQ=255)                    gCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTcgcg                                                                                                                                    >  8:111261/1‑149 (MQ=255)                     cAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa                                                                                                                                          >  3:172102/1‑142 (MQ=255)                     cAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa                                                                                                                                          <  4:172102/142‑1 (MQ=255)                           cGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCAcc                                                                                                                             >  4:188616/1‑149 (MQ=255)                                  ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑Cggg                                                                                                                      >  6:260112/1‑148 (MQ=255)                                  ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGc                                                                                                                     <  5:260112/149‑1 (MQ=255)                                   gCAAGACCTTCGTCGAGCAGATTGCCGACCAGGGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCa                                                                                                                    <  8:231389/149‑1 (MQ=255)                                   gCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCa                                                                                                                    <  7:111261/149‑1 (MQ=255)                                       gACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTAc                                                                                                                <  3:188616/149‑1 (MQ=255)                                       gACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTAc                                                                                                                >  2:111302/1‑149 (MQ=255)                                          cTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCg                                                                                                              >  8:109818/1‑148 (MQ=255)                                           ttCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGaa                                                                                                            >  7:252809/1‑149 (MQ=255)                                            tcgtcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAAc                                                                                                           >  5:357898/1‑149 (MQ=255)                                             cgtcgAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGTCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAAc                                                                                                           <  4:78284/148‑1 (MQ=255)                                               caagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTcc                                                                                                                                                 >  8:163976‑M1/101‑109 (MQ=255)                                               caagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTcc                                                                                                                                                 <  7:163976‑M1/9‑1 (MQ=255)                                                  aGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCa                                                                                                                    <  7:251789/134‑1 (MQ=255)                                                  aGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCa                                                                                                                    >  8:251789/1‑134 (MQ=255)                                                  aGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTgg                                                                                                     <  2:95175/149‑1 (MQ=255)                                                         tGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTgg                                                                                                     <  3:4613/142‑1 (MQ=255)                                                         tGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTgg                                                                                                     >  4:4613/1‑142 (MQ=255)                                                           ccGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGc                                                                                             <  8:252809/148‑1 (MQ=255)                                                                     cAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGaa                                                                                  <  1:111302/149‑1 (MQ=255)                                                                      aaTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGa                                                                                                   >  8:291717/1‑131 (MQ=255)                                                                      aaTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGa                                                                                                   <  7:291717/131‑1 (MQ=255)                                                                       gaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTgg                                                                                                     <  8:105176‑M1/52‑1 (MQ=255)                                                                       gaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTgg                                                                                                     >  7:105176‑M1/77‑128 (MQ=255)                                                                          ccccTGAGTACATCGAGATCATCGATAACGCCCGTGGCTGATCTGTAGCCTGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAggg                                                                             <  3:331656/149‑1 (MQ=255)                                                                          acgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGaa                                                                                                            <  6:139193‑M1/45‑1 (MQ=255)                                                                          acgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGaa                                                                                                            >  5:139193‑M1/74‑118 (MQ=255)                                                                                    cATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGACCACAAGATTCGCGCCCCACCAG‑CGGGCATTACCCCACCTGTGGGAGCGGGCAAGCCCGCCAAAAGGGC‑GGTACAGGc                                                                  >  6:330475/1‑149 (MQ=255)                                                                                     aTCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCt                                                                 >  3:76430/1‑149 (MQ=255)                                                                                            tcatcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAg                                                          <  6:357898/149‑1 (MQ=255)                                                                                                         ccGTTGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑aaa                                            <  7:181874/149‑1 (MQ=255)                                                                                                          cGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGAt                                                              <  5:339917/131‑1 (MQ=255)                                                                                                                       tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAg                                <  5:330475/147‑1 (MQ=255)                                                                                                                         gCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGc                            <  3:117360/149‑1 (MQ=255)                                                                                                                              tGCCGGCCTCTTCGCGGGCCCGCCCGCGCCCCCATGAATCGCCCCGCAACTG‑CCGGCAATACCGAAACTCTGGGAGCCGGCCTTCCCGCGAAGAGGGC‑GGTACCCGCGGAAACACCGCCAAGCAC‑AAAAAACCCCCCCACGCGCGcttt                       >  8:249080/1‑149 (MQ=255)                                                                                                                                ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCTCGGGGCGtttttt                     <  7:109818/149‑2 (MQ=255)                                                                                                                                  ggCCTCTTCGCGGGCGCGCCCCCAACCACAGGAGTAGCGCCCCCCCAGCCGGGCA‑TAACGAACCAGTGGGGGCCGGCCAGACCCCGCAGAAGGCGGGTAAAGG‑GGATAAAACGCCACGCACAAAAAAACCCCCCCCGGGGCGGTTTTgg                    >  8:26160/1‑148 (MQ=255)                                                                                                                                   gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGt                  >  8:333362/1‑149 (MQ=255)                                                                                                                                     ctctTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTAACGAACCAGTGGGAGCGGGCATTCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGtt                 >  4:234737/1‑148 (MQ=255)                                                                                                                                        ttCGCGGGCGCGCCCGCTCCCACAGGAGGCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc               <  1:136496/147‑1 (MQ=255)                                                                                                                                            cgGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCg         <  7:333362/149‑1 (MQ=255)                                                                                                                                                   GCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAg  <  2:322091‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                        GCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAG  >  NC_002947/867789‑868083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.