New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	867935 =	40 (0.760)	4 (0.090)	4/224	NT	11.9%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867995 =	24 (0.520)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

CAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGG  >  NC_002947/867857‑868140                                                                                                                                            |                                                                                                                                                    cAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGaa                                                                                                                                           <  1:111302/149‑1 (MQ=255)      ccccTGAGTACATCGAGATCATCGATAACGCCCGTGGCTGATCTGTAGCCTGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAggg                                                                                                                                      <  3:331656/149‑1 (MQ=255)                cATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGACCACAAGATTCGCGCCCCACCAG‑CGGGCATTACCCCACCTGTGGGAGCGGGCAAGCCCGCCAAAAGGGC‑GGTACAGGc                                                                                                                           >  6:330475/1‑149 (MQ=255)                 aTCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCt                                                                                                                          >  3:76430/1‑149 (MQ=255)                        tcatcGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAg                                                                                                                   <  6:357898/149‑1 (MQ=255)                                     ccGTTGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑aaa                                                                                                     <  7:181874/149‑1 (MQ=255)                                      cGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGAt                                                                                                                       <  5:339917/131‑1 (MQ=255)                                                   tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAg                                                                                         <  5:330475/147‑1 (MQ=255)                                                     gCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGc                                                                                     <  3:117360/149‑1 (MQ=255)                                                          tGCCGGCCTCTTCGCGGGCCCGCCCGCGCCCCCATGAATCGCCCCGCAACTG‑CCGGCAATACCGAAACTCTGGGAGCCGGCCTTCCCGCGAAGAGGGC‑GGTACCCGCGGAAACACCGCCAAGCAC‑AAAAAACCCCCCCACGCGCGcttt                                                                                >  8:249080/1‑149 (MQ=255)                                                            ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCTCGGGGCGtttttt                                                                              <  7:109818/149‑2 (MQ=255)                                                              ggCCTCTTCGCGGGCGCGCCCCCAACCACAGGAGTAGCGCCCCCCCAGCCGGGCA‑TAACGAACCAGTGGGGGCCGGCCAGACCCCGCAGAAGGCGGGTAAAGG‑GGATAAAACGCCACGCACAAAAAAACCCCCCCCGGGGCGGTTTTgg                                                                             >  8:26160/1‑148 (MQ=255)                                                               gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGt                                                                           >  8:333362/1‑149 (MQ=255)                                                                 ctctTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTAACGAACCAGTGGGAGCGGGCATTCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGtt                                                                          >  4:234737/1‑148 (MQ=255)                                                                    ttCGCGGGCGCGCCCGCTCCCACAGGAGGCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc                                                                        <  1:136496/147‑1 (MQ=255)                                                                        cgGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCg                                                                  <  7:333362/149‑1 (MQ=255)                                                                               GCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAg                                                           <  2:322091‑M1/149‑1 (MQ=255)                                                                                CCCGGTCCCACTGCCGTGGCGCCCCACGTG‑CGGGCTTTACCGACCCTGGGGGTGCGGCAATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGc                                                          >  5:237691‑M1/1‑149 (MQ=255)                                                                                   GCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCTCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTa                                                       >  4:76430‑M1/1‑149 (MQ=255)                                                                                   GCTCCCAAAGGAGTCGCGCGGCACTTG‑TGGGAATTACTGAACCTGTGGGTGGGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTa                                                       >  8:123395‑M1/1‑149 (MQ=255)                                                                                     TCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGttttt                                                                               >  8:320448‑M1/1‑123 (MQ=255)                                                                                     TCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGttttt                                                                               <  7:320448‑M1/123‑1 (MQ=255)                                                                                       CCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGt                                                     >  7:26160‑M1/1‑147 (MQ=255)                                                                                       CCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGc                                                   <  8:222962‑M1/149‑1 (MQ=255)                                                                                       CCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGc                                                   >  1:322091‑M1/1‑149 (MQ=255)                                                                                       CCACAGGAGTCGCGCCGCACCTG‑CGGGCAATACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGc                                                   <  1:203587‑M1/149‑1 (MQ=255)                                                                                        ccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc                                                                        <  8:105176‑M2/76‑1 (MQ=255)                                                                                        ccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc                                                                        >  7:105176‑M2/53‑128 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc                                                                        >  2:169831‑M1/1‑122 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAg                                                      >  4:53396‑M1/1‑140 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAg                                                      <  3:53396‑M1/140‑1 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAg                                                      <  2:266701‑M1/140‑1 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGAAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAg                                                      >  1:266701‑M1/1‑140 (MQ=255)                                                                                             GAGTCGCGCCGCACCTG‑CCGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTc                                                                        <  1:169831‑M1/122‑1 (MQ=255)                                                                                               ttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGt                                                                           <  6:139193‑M2/73‑1 (MQ=255)                                                                                               ttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGt                                                                           >  5:139193‑M2/46‑118 (MQ=255)                                                                                               gTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccgc                                           >  8:54637/1‑149 (MQ=255)                                                                                                    gccgcACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgc                                      >  8:107409/1‑149 (MQ=255)                                                                                                       gcACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgctgc                                   >  7:277744/1‑149 (MQ=255)                                                                                                           cTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGctctc                               >  2:255918/1‑149 (MQ=255)                                                                                                            tG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAgg                                                                                                                            <  1:172310/56‑1 (MQ=255)                                                                                                            tG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAgg                                                                                                                            >  2:172310/1‑56 (MQ=255)                                                                                                               cGGCCATTACCTATCCTGTGGGAGGGGGCATGCCCGCTAATAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTACTTGGCCGCCGGGCTGCTCTCTGc                            <  7:216978/149‑1 (MQ=255)                                                                                                                       aCCGAACCTGGGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTcc                     <  8:277744/148‑1 (MQ=255)                                                                                                                        ccGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAg                   <  7:249080/149‑1 (MQ=255)                                                                                                                        ccGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAg                   >  6:165670/1‑149 (MQ=255)                                                                                                                         cGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAACCGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCCgg                  <  7:222962/149‑1 (MQ=255)                                                                                                                                 tgggagcgggcATGCCCGCGAAGAGGGC‑GTTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgtc          <  7:209756‑M2/138‑1 (MQ=255)                                                                                                                                   ggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg                                                >  8:163976‑M2/10‑109 (MQ=255)                                                                                                                                   ggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg                                                <  7:163976‑M2/100‑1 (MQ=255)                                                                                                                                   ggagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgtcgt        >  2:233327‑M2/10‑149 (MQ=255)                                                                                                                                    gagcgggcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgtcgt        >  3:90447‑M2/9‑148 (MQ=255)                                                                                                                                          gcATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCgg  >  4:272255‑M2/3‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                    CAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTG‑CGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGC‑GGTACAGGCTGATCAAGCGCCAGGCAC‑AAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGG  >  NC_002947/867857‑868140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.