New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1160962 | 51 (0.970) | 3 (0.060) | 3/238 | NT | 5.7% | coding (774/846 nt) | gtsC | mannose/glucose ABC transporter permease |
? | NC_002947 | = 1160981 | 51 (1.030) | coding (793/846 nt) | gtsC | mannose/glucose ABC transporter permease |
GAACGACTTCCTGTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATC > NC_002947/1160821‑1161109 | gAACGACTTCCTGTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCctgc < 6:235635/149‑1 (MQ=255) ttCCTGTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCt > 2:1874/1‑148 (MQ=255) ccTGTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCt < 1:1874/146‑1 (MQ=255) gTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACgtgg > 6:25078/1‑149 (MQ=255) tggtgTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGtggcaggc > 5:25078‑M2/1‑141 (MQ=255) ttCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAccacgtagaccagcagggttggcaggccagc < 4:123222‑M1/148‑32 (MQ=255) ctcCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAat > 6:57840/1‑146 (MQ=255) ctcCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAat < 5:57840/146‑1 (MQ=255) ctcCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATAtt > 5:264039/1‑149 (MQ=255) gcggcgATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTg > 7:24758/1‑149 (MQ=255) gATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAAccc < 6:137659/109‑1 (MQ=255) gATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAAccc > 5:137659/1‑109 (MQ=255) gCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAccacgtagaccagcagggttggcaggcca < 5:105265‑M1/129‑30 (MQ=255) gCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAccacgtagaccagcagggttggcaggcca > 6:105265‑M1/1‑100 (MQ=255) cAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACgtgg < 4:229998/118‑1 (MQ=255) cAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACgtgg > 3:229998/1‑118 (MQ=255) gATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGt < 5:288727/132‑1 (MQ=255) gATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggccg > 5:99148/1‑149 (MQ=255) gATCACCGTAGCCCTGAACAATCTCGTCAATACCAGCACCCGCGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTCCCAACCCTGCAGGTCTACGTGGTGGCAGCCAAATATTTCGt > 6:288727/1‑132 (MQ=255) aTCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAata > 8:98570/1‑125 (MQ=255) aTCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAata < 7:98570/125‑1 (MQ=255) cGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCgg > 4:286386/1‑149 (MQ=255) cccTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAg < 6:99148/149‑1 (MQ=255) ccTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTc > 6:83885/1‑118 (MQ=255) ccTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTc < 5:83885/118‑1 (MQ=255) ccTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAgg > 4:330384/1‑149 (MQ=255) aCAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGt > 8:89169/1‑147 (MQ=255) aaTCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGc < 4:143699/149‑1 (MQ=255) ggTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt > 3:329693/1‑147 (MQ=255) ggTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCAt < 4:329693/147‑1 (MQ=255) gTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATgg < 3:330384/148‑1 (MQ=255) gTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATg < 7:89169/147‑1 (MQ=255) tCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGc > 5:6366/1‑148 (MQ=255) aCCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggccggc < 2:26179/120‑1 (MQ=255) aCCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGAcggccggc > 1:26179/1‑120 (MQ=255) ccAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCt < 3:286386/148‑1 (MQ=255) cAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCg < 6:264039/149‑1 (MQ=255) cGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTc < 8:24758/149‑1 (MQ=255) cGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGCTGGCAGGCAACTATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTCAGCCATCGCCACGCTCGAACtgc > 5:314280/1‑147 (MQ=255) ggCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCa < 5:56888/149‑1 (MQ=255) aaGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAAc > 5:215016/1‑139 (MQ=255) aaGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAAc < 6:215016/139‑1 (MQ=255) aGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTc > 7:212673/1‑134 (MQ=255) aGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTc < 8:212673/134‑1 (MQ=255) cAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGCTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGa > 7:3168/1‑149 (MQ=255) aaCGTCGACATGGCGGCGGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAggg > 1:173805/1‑107 (MQ=255) aaCGTCGACATGGCGGCGGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAggg < 2:173805/107‑1 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACaa > 4:230470/1‑137 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACaa < 3:230470/137‑1 (MQ=255) aTGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAg > 6:169439/1‑149 (MQ=255) gatgatCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCg > 8:280027/1‑148 (MQ=255) gatgatCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCg > 4:2286/1‑148 (MQ=255) tgatCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGa > 3:11903/1‑148 (MQ=255) gatCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAAtgtg > 4:88181/1‑118 (MQ=255) atCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATa < 7:280027/148‑1 (MQ=255) gCTGGCCTGCCAACCCTGCTGGTCTACGTGGtggcaggccagcgatcatcgctgccgccatgtcgacgttgtattccttggccccggtgctggtattgaccagattgttcagggctacggtgatcggttgcgaatcgccgctggagaa < 4:123222‑M2/148‑118 (MQ=255) cTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCt > 6:112146/1‑148 (MQ=255) cTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCt > 5:224326/1‑148 (MQ=255) tGGCCTGCCAACCCTGCTGGTCTACGTGGtggcaggccagcgatcatcgctgccgccatgtcgacgttgtattccttggccccggtgctggtattgaccagattgttcagggctacggtgatcggttgc > 6:105265‑M2/1‑29 (MQ=255) tGGCCTGCCAACCCTGCTGGTCTACGTGGtggcaggccagcgatcatcgctgccgccatgtcgacgttgtattccttggccccggtgctggtattgaccagattgttcagggctacggtgatcggttgc < 5:105265‑M2/129‑101 (MQ=255) gCCTGCCAccacgtagaccagcagggttggcaggccagcgatcatcgctgccgccatgtcgacgttgtattccttggccccggtgctggtattgaccagattgttcagggctacggtgatcggttgcgaatcgccgctggagaacacca > 5:25078‑M1/1‑8 (MQ=255) tGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGa > 2:182893/1‑148 (MQ=255) cAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATc < 6:224326/149‑1 (MQ=255) cAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATc < 5:112146/149‑1 (MQ=255) | GAACGACTTCCTGTTCGGCGTGGTGTTCTCCAGCGGCGATTCGCAACCGATCACCGTAGCCCTGAACAATCTGGTCAATACCAGCACCGGGGCCAAGGAATACAACGTCGACATGGCGGCAGCGATGATCGCTGGCCTGCCAACCCTGCTGGTCTACGTGGTGGCAGGCAAATATTTCGTGCGCGGGCTGACGGCCGGCGCGGTCAAGGGGTAAGCCATGGCAACGCTCGAACTTCGCAATGTGAACAAGACCTACGGCAGCGGCCTGCCGGATACCCTCAAGGACATC > NC_002947/1160821‑1161109 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |